Mercurial > repos > iuc > slamdunk
view test-data/reads2_snp.vcf @ 4:fe3fe68b09a7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/slamdunk commit ea4590f61d7764eb431986c16785e599191615a6
| author | iuc |
|---|---|
| date | Fri, 24 May 2019 13:30:30 -0400 |
| parents | 57bf9a0d49a5 |
| children |
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##fileformat=VCFv4.1 ##source=VarScan2 ##INFO=<ID=ADP,Number=1,Type=Integer,Description="Average per-sample depth of bases with Phred score >= 15"> ##INFO=<ID=WT,Number=1,Type=Integer,Description="Number of samples called reference (wild-type)"> ##INFO=<ID=HET,Number=1,Type=Integer,Description="Number of samples called heterozygous-variant"> ##INFO=<ID=HOM,Number=1,Type=Integer,Description="Number of samples called homozygous-variant"> ##INFO=<ID=NC,Number=1,Type=Integer,Description="Number of samples not called"> ##FILTER=<ID=str10,Description="Less than 10% or more than 90% of variant supporting reads on one strand"> ##FILTER=<ID=indelError,Description="Likely artifact due to indel reads at this position"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality"> ##FORMAT=<ID=SDP,Number=1,Type=Integer,Description="Raw Read Depth as reported by SAMtools"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Quality Read Depth of bases with Phred score >= 15"> ##FORMAT=<ID=RD,Number=1,Type=Integer,Description="Depth of reference-supporting bases (reads1)"> ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Depth of variant-supporting bases (reads2)"> ##FORMAT=<ID=FREQ,Number=1,Type=String,Description="Variant allele frequency"> ##FORMAT=<ID=PVAL,Number=1,Type=String,Description="P-value from Fisher's Exact Test"> ##FORMAT=<ID=RBQ,Number=1,Type=Integer,Description="Average quality of reference-supporting bases (qual1)"> ##FORMAT=<ID=ABQ,Number=1,Type=Integer,Description="Average quality of variant-supporting bases (qual2)"> ##FORMAT=<ID=RDF,Number=1,Type=Integer,Description="Depth of reference-supporting bases on forward strand (reads1plus)"> ##FORMAT=<ID=RDR,Number=1,Type=Integer,Description="Depth of reference-supporting bases on reverse strand (reads1minus)"> ##FORMAT=<ID=ADF,Number=1,Type=Integer,Description="Depth of variant-supporting bases on forward strand (reads2plus)"> ##FORMAT=<ID=ADR,Number=1,Type=Integer,Description="Depth of variant-supporting bases on reverse strand (reads2minus)"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT Sample1 chr5 120499 . T C . . . . .