Mercurial > repos > iuc > snapatac2_clustering

comparison macros.xml @ 3:509baa4a2da0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snapatac2 commit b37248ea9b492c096b143272aebc79d8f04c2984
author iuc
date Wed, 17 Jul 2024 05:54:38 +0000
parents 94ae400dde2f
children afb90d3485df
comparison
equal deleted inserted replaced
2:94ae400dde2f 3:509baa4a2da0
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">2.5.3</token> 2 <token name="@TOOL_VERSION@">2.6.4</token>
3 <token name="@VERSION_SUFFIX@">2</token> 3 <token name="@VERSION_SUFFIX@">0</token>
4 <token name="@PROFILE@">23.0</token> 4 <token name="@PROFILE@">23.0</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirement type="package" version="@TOOL_VERSION@">snapatac2</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">snapatac2</requirement>
7 <requirement type="package" version="5.18.0">plotly</requirement> 7 <requirement type="package" version="5.22.0">plotly</requirement>
8 <requirement type="package" version="0.2.1">python-kaleido</requirement> 8 <requirement type="package" version="0.2.1">python-kaleido</requirement>
9 <requirement type="package" version="0.19.19">polars</requirement> 9 <requirement type="package" version="1.1.0">polars</requirement>
10 <requirement type="package" version="14.0.1">pyarrow</requirement> 10 <requirement type="package" version="16.1.0">pyarrow</requirement>
11 <requirement type="package" version="0.11.3">python-igraph</requirement> 11 <requirement type="package" version="0.11.6">python-igraph</requirement>
12 <requirement type="package" version="0.8.33">hdbscan</requirement> 12 <requirement type="package" version="0.8.37">hdbscan</requirement>
13 <requirement type="package" version="0.0.9">harmonypy</requirement> 13 <requirement type="package" version="0.0.10">harmonypy</requirement>
14 <requirement type="package" version="1.7.4">scanorama</requirement> 14 <requirement type="package" version="1.7.4">scanorama</requirement>
15 <requirement type="package" version="3.0.1">macs3</requirement> 15 <requirement type="package" version="3.0.1">macs3</requirement>
16 <requirement type="package" version="0.70.16">multiprocess</requirement> 16 <requirement type="package" version="0.70.16">multiprocess</requirement>
17 <requirement type="package" version="0.10.2">leidenalg</requirement> 17 <requirement type="package" version="0.10.2">leidenalg</requirement>
18 <yield /> 18 <yield />
156 <xml name="render_plot_matching_text"> 156 <xml name="render_plot_matching_text">
157 <has_text_matching expression="width = 650"/> 157 <has_text_matching expression="width = 650"/>
158 <has_text_matching expression="height = 450"/> 158 <has_text_matching expression="height = 450"/>
159 </xml> 159 </xml>
160 <xml name="param_counting_strategy"> 160 <xml name="param_counting_strategy">
161 <param argument="counting_strategy" type="select" label="he strategy to compute feature counts"> 161 <param argument="counting_strategy" type="select" label="The strategy to compute feature counts">
162 <option value="fragment">fragment</option> 162 <option value="fragment">"fragment": based on the number of fragments that overlap with a region of interest</option>
163 <option value="insertion" selected="true">insertion</option> 163 <option value="insertion" selected="true">"insertion": based on the number of insertions that overlap with a region of interest</option>
164 <option value="paired-insertion">paired-insertion</option> 164 <option value="paired-insertion">"paired-insertion": similar to "insertion", but it only counts the insertions once if the pair of insertions of a fragment are both within the same region of interest</option>
165 </param> 165 </param>
166 </xml> 166 </xml>
167 167
168 <token name="@CMD_params_data_integration@"><![CDATA[ 168 <token name="@CMD_params_data_integration@"><![CDATA[
169 use_rep = '$method.use_rep', 169 use_rep = '$method.use_rep',