Mercurial > repos > iuc > snapatac2_clustering

changeset 3:509baa4a2da0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/snapatac2 commit b37248ea9b492c096b143272aebc79d8f04c2984
author iuc
date Wed, 17 Jul 2024 05:54:38 +0000
parents 94ae400dde2f
children afb90d3485df
files macros.xml
diffstat 1 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Jul 05 11:05:55 2024 +0000
+++ b/macros.xml	Wed Jul 17 05:54:38 2024 +0000
@@ -1,16 +1,16 @@
 <macros>
-    <token name="@TOOL_VERSION@">2.5.3</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@TOOL_VERSION@">2.6.4</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">23.0</token>
     <xml name="requirements">
         <requirement type="package" version="@TOOL_VERSION@">snapatac2</requirement>
-        <requirement type="package" version="5.18.0">plotly</requirement>
+        <requirement type="package" version="5.22.0">plotly</requirement>
         <requirement type="package" version="0.2.1">python-kaleido</requirement>
-        <requirement type="package" version="0.19.19">polars</requirement>
-        <requirement type="package" version="14.0.1">pyarrow</requirement>
-        <requirement type="package" version="0.11.3">python-igraph</requirement>
-        <requirement type="package" version="0.8.33">hdbscan</requirement>
-        <requirement type="package" version="0.0.9">harmonypy</requirement>
+        <requirement type="package" version="1.1.0">polars</requirement>
+        <requirement type="package" version="16.1.0">pyarrow</requirement>
+        <requirement type="package" version="0.11.6">python-igraph</requirement>
+        <requirement type="package" version="0.8.37">hdbscan</requirement>
+        <requirement type="package" version="0.0.10">harmonypy</requirement>
         <requirement type="package" version="1.7.4">scanorama</requirement>
         <requirement type="package" version="3.0.1">macs3</requirement>
         <requirement type="package" version="0.70.16">multiprocess</requirement>
@@ -158,10 +158,10 @@
         <has_text_matching expression="height = 450"/>
     </xml>
     <xml name="param_counting_strategy">
-        <param argument="counting_strategy" type="select" label="he strategy to compute feature counts">
-            <option value="fragment">fragment</option>
-            <option value="insertion" selected="true">insertion</option>
-            <option value="paired-insertion">paired-insertion</option>
+        <param argument="counting_strategy" type="select" label="The strategy to compute feature counts">
+            <option value="fragment">"fragment": based on the number of fragments that overlap with a region of interest</option>
+            <option value="insertion" selected="true">"insertion": based on the number of insertions that overlap with a region of interest</option>
+            <option value="paired-insertion">"paired-insertion": similar to "insertion", but it only counts the insertions once if the pair of insertions of a fragment are both within the same region of interest</option>
         </param>
     </xml>