Mercurial > repos > iuc > snapatac2_plotting
comparison tool-data/all_fasta.loc.sample @ 6:1ac4a5f05f33 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/snapatac2 commit e0f59fae19e57f54ae0c351a16dd1805d12aba1d
| author | iuc |
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| date | Tue, 25 Nov 2025 16:41:12 +0000 |
| parents | |
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| 5:05bd4db20227 | 6:1ac4a5f05f33 |
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| 1 #This file lists the locations and dbkeys of all the genome and transcriptome fasta files | |
| 2 #under the "genome" directory (a directory that contains a directory | |
| 3 #for each build. This file has the format (white space characters are | |
| 4 #TAB characters): | |
| 5 # | |
| 6 #<unique_build_id> <dbkey> <display_name> <file_path> | |
| 7 # | |
| 8 #So, all_fasta.loc could look something like this: | |
| 9 # | |
| 10 #apiMel4.5 apiMel4.5 Honeybee (Apis mellifera): apiMel4.5 /path/to/genome/apiMel4.5/apiMel4.5.fa | |
| 11 #hg38canon hg38 Human (Homo sapiens): hg38 Canonical /path/to/genome/hg38/hg38canon.fa | |
| 12 #hg38full hg38 Human (Homo sapiens): hg38 Full /path/to/genome/hg38/hg38full.fa | |
| 13 #hg38full.90 hg38 Human (Homo sapiens): hg38 Full Trans v90 /path/to/genome/hg38/hg38fulltrans.fa | |
| 14 | |
| 15 #Your all_fasta.loc file should contain an entry for each individual | |
| 16 #fasta file. So there will be multiple fasta files for each build, | |
| 17 #such as with hg38 above. |