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annotate tool-data/all_fasta.loc.sample @ 3:09f5c6f3088a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc commit efa9995b93e5f32a148d9c3cf65a008543e5a6b4
author iuc
date Thu, 26 Sep 2024 11:44:13 +0000
parents 220316da739c
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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1 #This file lists the locations and dbkeys of all the fasta files
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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2 #under the "genome" directory (a directory that contains a directory
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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diff changeset
3 #for each build). The script extract_fasta.py will generate the file
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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diff changeset
4 #all_fasta.loc. This file has the format (white space characters are
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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5 #TAB characters):
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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6 #
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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diff changeset
7 #<unique_build_id> <dbkey> <display_name> <file_path>
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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diff changeset
8 #
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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diff changeset
9 #So, all_fasta.loc could look something like this:
220316da739c planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
iuc
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diff changeset
10 #test1 test1 Test-Genome ./test-data/test1.fa