Mercurial > repos > iuc > sniffles
comparison test-data/expected_output.vcf @ 3:09f5c6f3088a draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit efa9995b93e5f32a148d9c3cf65a008543e5a6b4
| author | iuc |
|---|---|
| date | Thu, 26 Sep 2024 11:44:13 +0000 |
| parents | 3f6f028f418f |
| children | 43fffeed243f |
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| 2:220316da739c | 3:09f5c6f3088a |
|---|---|
| 1 ##fileformat=VCFv4.2 | 1 ##fileformat=VCFv4.2 |
| 2 ##source=Sniffles2_2.4 | 2 ##source=Sniffles2_2.4 |
| 3 ##command="/home/ross/miniconda3/envs/__sniffles@2.4/bin/sniffles -t 1 -i input.bam -v /tmp/tmpxu4n4sep/job_working_directory/000/2/outputs/dataset_5190dadb-3f7f-474a-a5d2-d0abcdc81344.dat --minsupport auto --max-splits-kb 0.1 --minsvlen 50 --mapq 20 --min-alignment-length 100 --cluster-binsize 100 --cluster-r 2.5 --allow-overwrite" | 3 ##command="/home/ross/miniconda3/envs/__sniffles@2.4/bin/sniffles -t 1 -i input.bam -v /tmp/tmpy46o57ly/job_working_directory/000/2/outputs/dataset_b3c7245e-3129-45a7-9a94-f6e837049557.dat --allow-overwrite --minsupport auto --max-splits-kb 0.1 --minsvlen 50 --mapq 20 --min-alignment-length 100 --cluster-binsize 100 --cluster-r 2.5" |
| 4 ##fileDate="2024/09/14 14:15:00" | 4 ##fileDate="2024/09/26 18:20:57" |
| 5 ##contig=<ID=1,length=249250621> | 5 ##contig=<ID=1,length=249250621> |
| 6 ##contig=<ID=2,length=243199373> | 6 ##contig=<ID=2,length=243199373> |
| 7 ##contig=<ID=3,length=198022430> | 7 ##contig=<ID=3,length=198022430> |
| 8 ##contig=<ID=4,length=191154276> | 8 ##contig=<ID=4,length=191154276> |
| 9 ##contig=<ID=5,length=180915260> | 9 ##contig=<ID=5,length=180915260> |