Mercurial > repos > iuc > sniffles
comparison test-data/expected_outcome6.vcf @ 4:43fffeed243f draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit 03fbb13717809f9198ab113192d241599705ef7b
| author | iuc |
|---|---|
| date | Sun, 29 Sep 2024 10:23:36 +0000 |
| parents | 09f5c6f3088a |
| children |
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| 3:09f5c6f3088a | 4:43fffeed243f |
|---|---|
| 1 ##fileformat=VCFv4.2 | 1 ##fileformat=VCFv4.2 |
| 2 ##source=Sniffles2_2.4 | 2 ##source=Sniffles2_2.4 |
| 3 ##command="/home/ross/miniconda3/envs/__sniffles@2.4/bin/sniffles -t 1 -i input.bam -v /tmp/tmpy46o57ly/job_working_directory/000/13/outputs/dataset_43c28376-bced-457b-9bc3-79b482047f0a.dat --allow-overwrite --reference /tmp/tmpy46o57ly/files/d/8/7/dataset_d879002d-9f55-45f7-a278-e6c9b6881fe8.dat --minsupport auto --max-splits-kb 0.1 --minsvlen 50 --mapq 20 --min-alignment-length 100 --cluster-binsize 100 --cluster-r 2.5" | 3 ##command="/home/ross/miniconda3/envs/__sniffles@2.4/bin/sniffles -t 1 -i input.bam -v /tmp/tmpbu008nw6/job_working_directory/000/13/outputs/dataset_93c07e69-9ce4-4394-84c8-8a51cb2e2c89.dat --allow-overwrite --reference reference.fa --minsupport auto --max-splits-kb 0.1 --minsvlen 50 --mapq 20 --min-alignment-length 100 --cluster-binsize 100 --cluster-r 2.5" |
| 4 ##fileDate="2024/09/26 18:24:13" | 4 ##fileDate="2024/09/28 23:21:51" |
| 5 ##contig=<ID=1,length=249250621> | 5 ##contig=<ID=1,length=249250621> |
| 6 ##contig=<ID=2,length=243199373> | 6 ##contig=<ID=2,length=243199373> |
| 7 ##contig=<ID=3,length=198022430> | 7 ##contig=<ID=3,length=198022430> |
| 8 ##contig=<ID=4,length=191154276> | 8 ##contig=<ID=4,length=191154276> |
| 9 ##contig=<ID=5,length=180915260> | 9 ##contig=<ID=5,length=180915260> |