Mercurial > repos > iuc > sniffles
changeset 2:220316da739c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc commit c81cc2981db77f9a1a3b287d35dc7d1f13042a27
| author | iuc |
|---|---|
| date | Wed, 25 Sep 2024 13:25:31 +0000 |
| parents | 3f6f028f418f |
| children | 09f5c6f3088a |
| files | tool-data/all_fasta.loc.sample tool_data_table_conf.xml.sample tool_data_table_conf.xml.test |
| diffstat | 3 files changed, 25 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/all_fasta.loc.sample Wed Sep 25 13:25:31 2024 +0000 @@ -0,0 +1,10 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. This file has the format (white space characters are +#TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, all_fasta.loc could look something like this: +#test1 test1 Test-Genome ./test-data/test1.fa
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Wed Sep 25 13:25:31 2024 +0000 @@ -0,0 +1,7 @@ +<?xml version="1.0"?> +<tables> + <table name="all_fasta" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/all_fasta.loc" /> + </table> +</tables>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.test Wed Sep 25 13:25:31 2024 +0000 @@ -0,0 +1,8 @@ +<?xml version="1.0"?> +<tables> + <!-- Locations of reference genome files in fasta format --> + <table name="all_fasta" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="${__HERE__}/test-data/all_fasta.loc" /> + </table> +</tables>