Mercurial > repos > iuc > snippy
comparison test-data/all_fasta.loc @ 5:0aa87d97847f draft
"planemo upload commit 13d17dd18915767d3ca5bbd92ce3e5e80a287112"
| author | iuc |
|---|---|
| date | Fri, 13 Sep 2019 05:45:21 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 4:9bccc8404a3c | 5:0aa87d97847f |
|---|---|
| 1 #This file lists the locations and dbkeys of all the fasta files | |
| 2 #under the "genome" directory (a directory that contains a directory | |
| 3 #for each build). The script extract_fasta.py will generate the file | |
| 4 #all_fasta.loc. This file has the format (white space characters are | |
| 5 #TAB characters): | |
| 6 # | |
| 7 #<unique_build_id> <dbkey> <display_name> <file_path> | |
| 8 # | |
| 9 #So, all_fasta.loc could look something like this: | |
| 10 # | |
| 11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa | |
| 12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa | |
| 13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa | |
| 14 # | |
| 15 #Your all_fasta.loc file should contain an entry for each individual | |
| 16 #fasta file. So there will be multiple fasta files for each build, | |
| 17 #such as with hg19 above. | |
| 18 # | |
| 19 test_id test_dbkey test display name ${__HERE__}/ref.fna | |
| 20 |