Mercurial > repos > iuc > snippy
diff snippy.xml @ 8:32f2211eeec3 draft
"planemo upload commit 5b41fad964a75dcdc794e90342144c3eccea16d7"
author | iuc |
---|---|
date | Sun, 01 Dec 2019 13:06:05 -0500 |
parents | e32aac2299fb |
children | e4d0231d8595 |
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--- a/snippy.xml Fri Nov 15 08:19:05 2019 -0500 +++ b/snippy.xml Sun Dec 01 13:06:05 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="snippy" name="snippy" version="@VERSION@+galaxy0"> +<tool id="snippy" name="snippy" version="@VERSION@+galaxy1"> <description> Snippy finds SNPs between a haploid reference genome and your NGS sequence reads. </description> @@ -54,7 +54,7 @@ #end if mkdir -p ${dir_name} && cp -r out/reference out/snps.tab out/snps.aligned.fa out/snps.vcf ${dir_name}/ && - tar -cf - ${dir_name} | gzip > out.tgz + tar -czf out.tgz ${dir_name} #if "outcon" in str($outputs) and $adv.rename_cons && sed -i 's/>.*/>${dir_name}/' out/snps.consensus.fa #end if