# HG changeset patch # User iuc # Date 1562852473 14400 # Node ID 9bccc8404a3c92fac8eb2886d39a84217ab9f3c8 # Parent feb7e635c6afe30a39c26b19ed1cf5777a049038 planemo upload commit b5890b40c257a093ebf358294544aa69087da51e diff -r feb7e635c6af -r 9bccc8404a3c snippy-core.xml --- a/snippy-core.xml Tue Apr 02 17:21:50 2019 -0400 +++ b/snippy-core.xml Thu Jul 11 09:41:13 2019 -0400 @@ -12,7 +12,7 @@ #set $sample_name = os.path.splitext(os.path.basename(str($indir.name)))[0] mkdir '$sample_name' && tar -xf '$indir' -C '$sample_name' --strip-components=1 && #end for - #set snippy_dirs = ' '.join([os.path.splitext(os.path.basename(str($indir.name)))[0] for $indir in $indirs]) + #set snippy_dirs = " ".join(["'{0}'".format(os.path.splitext(os.path.basename(str($indir.name)))[0]) for $indir in $indirs]) snippy-core --ref '$ref' ${snippy_dirs}