Mercurial > repos > iuc > snippy

changeset 7:e32aac2299fb draft

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"planemo upload commit 401528f2dba371d4ca2491aaa83e0b2bfe36f81a"
author iuc
date Fri, 15 Nov 2019 08:19:05 -0500
parents 4df82423ba61
children 32f2211eeec3
files snippy.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/snippy.xml	Mon Nov 04 20:07:06 2019 -0500
+++ b/snippy.xml	Fri Nov 15 08:19:05 2019 -0500
@@ -54,7 +54,7 @@
         #end if
 
         mkdir -p ${dir_name} && cp -r out/reference out/snps.tab out/snps.aligned.fa out/snps.vcf ${dir_name}/ &&
-        tar -czf out.tgz ${dir_name}
+        tar -cf - ${dir_name} | gzip > out.tgz
         #if "outcon" in str($outputs) and $adv.rename_cons
           && sed -i 's/>.*/>${dir_name}/' out/snps.consensus.fa
         #end if