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comparison snpEff_macros.xml @ 1:500832f27cbc draft

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author iuc
date Thu, 22 Jan 2015 08:28:37 -0500
parents e8adfc4c0a6b
children b24873564cf6
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0:e8adfc4c0a6b 1:500832f27cbc
1 <macros> 1 <macros>
2 <xml name="requirements"> 2 <xml name="requirements">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.4">snpEff</requirement> 4 <requirement type="package" version="4.0">snpEff</requirement>
5 </requirements> 5 </requirements>
6 </xml> 6 </xml>
7 <xml name="stdio"> 7 <xml name="stdio">
8 <stdio> 8 <stdio>
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
10 <exit_code range="1:" level="fatal" description="Error" /> 10 <exit_code range="1:" level="fatal" description="Error" />
11 </stdio> 11 </stdio>
12 </xml> 12 </xml>
13 <token name="@WRAPPER_VERSION@">4.0</token>
14 <token name="@SNPEFF_VERSION@">SnpEff4.0</token>
15 <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_0/</token>
13 <token name="@EXTERNAL_DOCUMENTATION@"> 16 <token name="@EXTERNAL_DOCUMENTATION@">
14 17
15 For details about this tool, please go to http://snpeff.sourceforge.net/SnpSift.html#intervals 18 For details about this tool, please go to:
19 http://snpeff.sourceforge.net/SnpEff_manual.html
16 20
17 </token> 21 </token>
18 <token name="@CITATION_SECTION@">------ 22 <token name="@CITATION_SECTION@">------
19 23
20 **Citation** 24 **Citation**
21 25
22 For the underlying tool, please cite the following two publications: 26 For the underlying tool, please cite the following two publications:
23 27
24 SnpEff citation: 28 SnpEff citation:
25 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process] 29 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly 6(2):80-92, 2012
26
27 SnpSift citation:
28 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.
29 30
30 </token> 31 </token>
32 <xml name="citations">
33 <citations>
34 <citation type="doi">10.4161/fly.19695</citation>
35 <yield />
36 </citations>
37 </xml>
31 </macros> 38 </macros>