Mercurial > repos > iuc > snpeff

comparison snpEff_macros.xml @ 24:cfcf33df7fc0 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit e4366b6a23223f84039a0590cf0d7079b83d8f84"
author iuc
date Wed, 13 Oct 2021 23:30:29 +0000
parents 74aebe30fb52
children 5c7b70713fb5
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23:74aebe30fb52 24:cfcf33df7fc0
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36 SnpEff relies on specially formatted databases to generate annotations. It will not work without them. There are several ways in which these databases can be obtained. 36 SnpEff relies on specially formatted databases to generate annotations. It will not work without them. There are several ways in which these databases can be obtained.
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38 **Pre-cached databases** 38 **Pre-cached databases**
39 39
40 Many standard (e.g., human, mouse, *Drosophila*) databases are likely pre-cached within a given Galaxy instance. You should be able to see them listed in **Genome** drop-down of **SbpEff eff** tool. 40 Many standard (e.g., human, mouse, *Drosophila*) databases are likely pre-cached within a given Galaxy instance. You should be able to see them listed in **Genome** drop-down of **SnpEff eff** tool.
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42 In you *do not see them* keep reading... 42 In you *do not see them* keep reading...
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44 **Download pre-built databases** 44 **Download pre-built databases**
45 45