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comparison snpEff_macros.xml @ 0:e8adfc4c0a6b draft

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author iuc
date Wed, 11 Dec 2013 08:53:32 -0500
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children 500832f27cbc
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-1:000000000000 0:e8adfc4c0a6b
1 <macros>
2 <xml name="requirements">
3 <requirements>
4 <requirement type="package" version="3.4">snpEff</requirement>
5 </requirements>
6 </xml>
7 <xml name="stdio">
8 <stdio>
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
10 <exit_code range="1:" level="fatal" description="Error" />
11 </stdio>
12 </xml>
13 <token name="@EXTERNAL_DOCUMENTATION@">
14
15 For details about this tool, please go to http://snpeff.sourceforge.net/SnpSift.html#intervals
16
17 </token>
18 <token name="@CITATION_SECTION@">------
19
20 **Citation**
21
22 For the underlying tool, please cite the following two publications:
23
24 SnpEff citation:
25 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]
26
27 SnpSift citation:
28 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.
29
30 </token>
31 </macros>