Mercurial > repos > iuc > snpeff
diff snpEff_macros.xml @ 7:7adfd0589f49 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 5c6d595ecbf2e4e39c25662a165c9e475e01ecd1
| author | iuc |
|---|---|
| date | Tue, 18 Apr 2017 09:33:56 -0400 |
| parents | 698ef30638a8 |
| children | ce135864629c |
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--- a/snpEff_macros.xml Mon Dec 19 11:56:53 2016 -0500 +++ b/snpEff_macros.xml Tue Apr 18 09:33:56 2017 -0400 @@ -1,7 +1,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="4.1">snpEff</requirement> + <requirement type="package" version="4.3k">snpeff</requirement> </requirements> </xml> <xml name="stdio"> @@ -10,22 +10,16 @@ <exit_code range="1:" level="fatal" description="Error" /> </stdio> </xml> - <token name="@CONDA_SNPEFF_JAR_PATH@">if [ -z "\$SNPEFF_JAR_PATH" ]; then export SNPEFF_JAR_PATH=\$(dirname \$(readlink -e \$(which snpEff))); fi</token> <xml name="version_command"> <version_command><![CDATA[ - if [ -z "$SNPEFF_JAR_PATH" ]; then - export SNPEFF_JAR_PATH=$(dirname $(readlink -e $(which snpEff))); - fi && java -jar "$SNPEFF_JAR_PATH/snpEff.jar" -version +snpEff -version ]]></version_command> </xml> - <token name="@WRAPPER_VERSION@">4.1</token> - <token name="@SNPEFF_VERSION@">SnpEff4.1</token> - <token name="@SNPEFF_DATABASE_URL@">https://snpeff-data.galaxyproject.org/databases/v4_1/</token> + <token name="@WRAPPER_VERSION@">4.3k</token> + <token name="@SNPEFF_VERSION@">SnpEff4.3</token> + <token name="@SNPEFF_DATABASE_URL@">https://sourceforge.net/projects/snpeff/files/databases/v4_3/</token> <token name="@EXTERNAL_DOCUMENTATION@"> - -For details about this tool, please go to: - http://snpeff.sourceforge.net/SnpEff_manual.html - +For details about this tool, please go to: http://snpeff.sourceforge.net/SnpEff_manual.html </token> <xml name="citations"> <citations>