Mercurial > repos > iuc > snpeff

changeset 19:36dc3690a82c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 530737ce6054364b394db08d42e3777355fa5c05
author iuc
date Wed, 12 Sep 2018 14:36:04 -0400
parents dd3622f501f3
children 8f92c2b26e6d
files snpeff_get_chr_names.xml
diffstat 1 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/snpeff_get_chr_names.xml	Fri Sep 07 10:30:41 2018 -0400
+++ b/snpeff_get_chr_names.xml	Wed Sep 12 14:36:04 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@wrapper_version@.galaxy1">
+<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy1">
     <description>list chromosome names/lengths</description>
     <macros>
         <import>snpEff_macros.xml</import>
@@ -39,18 +39,18 @@
                 <param name="genomeVersion" type="select" label="Genome">
                     <help>This can only be used on built-in databases manually configured by your galaxy admin.</help>
                     <options from_data_table="snpeffv_genomedb">
-                            <filter type="static_value" name="snpeff_version" value="@snpeff_version@" column="1"/>
+                            <filter type="static_value" name="SNPEFF_VERSION" value="@SNPEFF_VERSION@" column="1"/>
                             <filter type="unique_value" column="2" />
                     </options>
                 </param>
             </when>
             <when value="history">
-                <param name="snpeff_db" type="data" format="snpeffdb" label="@snpeff_version@ Genome Data">
+                <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data">
                     <help>This can only be used on databases in your history that were downloaded using the snpEff download tool.</help>
-                    <options options_filter_attribute="metadata.snpeff_version" >
-                        <filter type="add_value" value="@snpeff_version@" />
+                    <options options_filter_attribute="metadata.SNPEFF_VERSION" >
+                        <filter type="add_value" value="@SNPEFF_VERSION@" />
                     </options>
-                    <validator type="expression" message="This version of SnpEff will only work with @snpeff_version@ genome databases">value is not None and value.metadata.snpeff_version == "@snpeff_version@"</validator>
+                    <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.SNPEFF_VERSION == "@SNPEFF_VERSION@"</validator>
                 </param>
             </when>
             <when value="named">
@@ -60,12 +60,12 @@
                 </param>
             </when>
             <when value="custom">
-                <param name="snpeff_db" type="data" format="snpeffdb" label="@snpeff_version@ Genome Data">
+                <param name="snpeff_db" type="data" format="snpeffdb" label="@SNPEFF_VERSION@ Genome Data">
                     <help>This can only be used on databases in your history that were created using the snpEff build tool.</help>
-                    <options options_filter_attribute="metadata.snpeff_version" >
-                        <filter type="add_value" value="@snpeff_version@" />
+                    <options options_filter_attribute="metadata.SNPEFF_VERSION" >
+                        <filter type="add_value" value="@SNPEFF_VERSION@" />
                     </options>
-                    <validator type="expression" message="This version of SnpEff will only work with @snpeff_version@ genome databases">value is not None and value.metadata.snpeff_version == "@snpeff_version@"</validator>
+                    <validator type="expression" message="This version of SnpEff will only work with @SNPEFF_VERSION@ genome databases">value is not None and value.metadata.SNPEFF_VERSION == "@SNPEFF_VERSION@"</validator>
                 </param>
             </when>
         </conditional>