Mercurial > repos > iuc > snpsift

annotate readme.rst @ 5:09d6806c609e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
author iuc
date Wed, 18 Apr 2018 07:28:51 -0400
parents 9e8280e19338
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9e8280e19338 Uploaded
iuc
parents:
diff changeset
1 These are galaxy tools for SnpEff a variant annotation and effect prediction tool by Pablo Cingolani.
9e8280e19338 Uploaded
iuc
parents:
diff changeset
2 It annotates and predicts the effects of variants on genes (such as amino acid changes).
9e8280e19338 Uploaded
iuc
parents:
diff changeset
3 ( http://snpeff.sourceforge.net/ )
9e8280e19338 Uploaded
iuc
parents:
diff changeset
4
9e8280e19338 Uploaded
iuc
parents:
diff changeset
5 This repository contains a tool_dependencies.xml file that will attempt to automatically install SnpEff and SnpSift.
9e8280e19338 Uploaded
iuc
parents:
diff changeset
6
9e8280e19338 Uploaded
iuc
parents:
diff changeset
7 SnpEff citation:
9e8280e19338 Uploaded
iuc
parents:
diff changeset
8 "A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.", Cingolani P, Platts A, Wang le L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM. Fly (Austin). 2012 Apr-Jun;6(2):80-92. PMID: 22728672 [PubMed - in process]
9e8280e19338 Uploaded
iuc
parents:
diff changeset
9
9e8280e19338 Uploaded
iuc
parents:
diff changeset
10 SnpSift citation:
9e8280e19338 Uploaded
iuc
parents:
diff changeset
11 "Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3, 2012.