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comparison snpSift_macros.xml @ 5:09d6806c609e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 70ff70918368ff0deeb596c2190a770abe9e1c9b
author iuc
date Wed, 18 Apr 2018 07:28:51 -0400
parents 20c7d583fec1
children
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4:b04635ebfab0 5:09d6806c609e
1 <macros> 1 <macros>
2 <xml name="requirements"> 2 <xml name="requirements">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="4.3.1p">snpsift</requirement> 4 <requirement type="package" version="4.3.1t">snpsift</requirement>
5 <!--Coreutils are required to make readlink work across platforms. Previous version did not work on MacOS-->
6 <requirement type="package" version="8.25">coreutils</requirement>
7 <!--PERL is required to make SnpSift helper scripts run-->
8 <requirement type="package" version="5.26">perl</requirement>
5 </requirements> 9 </requirements>
6 </xml> 10 </xml>
7 <xml name="stdio"> 11 <xml name="stdio">
8 <stdio> 12 <stdio>
9 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" /> 13 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
14 <xml name="version_command"> 18 <xml name="version_command">
15 <version_command><![CDATA[ 19 <version_command><![CDATA[
16 SnpSift dbnsfp 2>&1|head -n 1 20 SnpSift dbnsfp 2>&1|head -n 1
17 ]]></version_command> 21 ]]></version_command>
18 </xml> 22 </xml>
19 <token name="@WRAPPER_VERSION@">4.3</token> 23 <token name="@WRAPPER_VERSION@">4.3+t</token>
20 <token name="@EXTERNAL_DOCUMENTATION@"> 24 <token name="@EXTERNAL_DOCUMENTATION@">
21 For details about this tool, please go to: 25 For details about this tool, please go to:
22 26
23 - http://snpeff.sourceforge.net/SnpEff_manual.html 27 - http://snpeff.sourceforge.net/SnpEff_manual.html
24 </token> 28 </token>