Mercurial > repos > iuc > snpsift

diff test-data/test_rmEff.vcf @ 0:9e8280e19338 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Thu, 22 Jan 2015 08:39:07 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test_rmEff.vcf	Thu Jan 22 08:39:07 2015 -0500
@@ -0,0 +1,10 @@
+##fileformat=VCFv4.1
+##samtoolsVersion=0.1.18 (r982:295)
+##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
+##SnpEffVersion="3.5 (build 2014-02-12), by Pablo Cingolani"
+##SnpEffCmd="SnpEff  -i vcf -o vcf -upDownStreamLen 5000 -spliceSiteSize 1 -stats /Users/jj/gxt/gxt/database/files/004/dataset_4998.dat GRCh37.71 /Users/jj/gxt/gxt/database/files/004/dataset_4996.dat "
+##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Effect_Impact | Functional_Class | Codon_Change | Amino_Acid_Change| Amino_Acid_length | Gene_Name | Transcript_BioType | Gene_Coding | Transcript_ID | Exon_Rank  | Genotype_Number [ | ERRORS | WARNINGS ] )' ">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+chr4	100239319	rs1229984	T	C	94.3	.	DP=29
+chr12	32491626	rs1471909	G	A	124.0	.	DP=22
+chrX	153010066	rs11803	C	T	73.8	.	DP=34