Mercurial > repos > iuc > snpsift
diff snpSift_vartype.xml @ 2:bf8c1526871b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit d12355cea76843e3ed6f09d96c3e9fe22afe4a4f
author | iuc |
---|---|
date | Mon, 05 Dec 2016 12:11:18 -0500 |
parents | 98708b88af9f |
children | 20c7d583fec1 |
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--- a/snpSift_vartype.xml Tue Jun 07 10:04:09 2016 -0400 +++ b/snpSift_vartype.xml Mon Dec 05 12:11:18 2016 -0500 @@ -1,4 +1,4 @@ -<tool id="snpsift_vartype" name="SnpSift Variant Type" version="@WRAPPER_VERSION@.0"> +<tool id="snpsift_vartype" name="SnpSift Variant Type" version="@WRAPPER_VERSION@.1"> <description>Annotate with variant type</description> <macros> <import>snpSift_macros.xml</import> @@ -7,7 +7,8 @@ <expand macro="stdio" /> <expand macro="version_command" /> <command><![CDATA[ - java -jar "\$SNPEFF_JAR_PATH/SnpSift.jar" varType "$input" 2> "$log" > "$output" + @CONDA_SNPSIFT_JAR_PATH@ && + java -jar "\$SNPSIFT_JAR_PATH/SnpSift.jar" varType "$input" 2> "$log" > "$output" ]]> </command> <inputs> @@ -33,10 +34,7 @@ This Galaxy tool is Copyright © 2013-2014 `CRS4 Srl.`_ and is released under the `MIT license`_. .. _CRS4 Srl.: http://www.crs4.it/ -.. _MIT license: http://opensource.org/licenses/MIT - -@CITATION_SECTION@ - +.. _MIT license: https://opensource.org/licenses/MIT ]]> </help> <expand macro="citations" />