annotate test-data/test_dbnsfpdb.tabular @ 1:13191d4914f7
draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_dbnsfp commit 21b46ae2c90ba7e569b2b3a9eaf938f8dedb2c31
| author |
iuc |
| date |
Tue, 07 Jun 2016 10:04:48 -0400 |
| parents |
dc480609d9c1 |
| children |
|
| rev |
line source |
|
0
|
1 #chr pos(1-coor) ref alt aaref aaalt hg18_pos(1-coor) genename Uniprot_acc Uniprot_id Uniprot_aapos Interpro_domain cds_strand refcodon SLR_test_statistic codonpos fold-degenerate Ancestral_allele Ensembl_geneid Ensembl_transcriptid aapos aapos_SIFT aapos_FATHMM SIFT_score SIFT_converted_rankscore SIFT_pred Polyphen2_HDIV_score Polyphen2_HDIV_rankscore Polyphen2_HDIV_pred Polyphen2_HVAR_score Polyphen2_HVAR_rankscore Polyphen2_HVAR_pred LRT_score LRT_converted_rankscore LRT_pred MutationTaster_score MutationTaster_converted_rankscore MutationTaster_pred MutationAssessor_score MutationAssessor_rankscore MutationAssessor_pred FATHMM_score FATHMM_rankscore FATHMM_pred RadialSVM_score RadialSVM_rankscore RadialSVM_pred LR_score LR_rankscore LR_pred Reliability_index CADD_raw CADD_raw_rankscore CADD_phred GERP++_NR GERP++_RS GERP++_RS_rankscore phyloP46way_primate phyloP46way_primate_rankscore phyloP46way_placental phyloP46way_placental_rankscore phyloP100way_vertebrate phyloP100way_vertebrate_rankscore phastCons46way_primate phastCons46way_primate_rankscore phastCons46way_placental phastCons46way_placental_rankscore phastCons100way_vertebrate phastCons100way_vertebrate_rankscore SiPhy_29way_pi SiPhy_29way_logOdds SiPhy_29way_logOdds_rankscore LRT_Omega UniSNP_ids 1000Gp1_AC 1000Gp1_AF 1000Gp1_AFR_AC 1000Gp1_AFR_AF 1000Gp1_EUR_AC 1000Gp1_EUR_AF 1000Gp1_AMR_AC 1000Gp1_AMR_AF 1000Gp1_ASN_AC 1000Gp1_ASN_AF ESP6500_AA_AF ESP6500_EA_AF
|
|
|
2 1 69134 A C E A 58997 OR4F5 Q8NH21 OR4F5_HUMAN 15 . + GAA . 2 0 . ENSG00000186092 ENST00000534990;ENST00000335137 63;15 ENSP00000334393:E15A ENSP00000334393:E15A 0.03 0.62326 D 0.043 0.20261 B 0.037 0.21917 B 0.263780 0.15411 U 0.998654 0.22851 N 2.635 0.83312 M 7.42 0.00438 T -0.9897 0.32693 T 0.0017 0.00524 T 10 -0.186758 0.06340 3.092 2.31 2.31 0.28768 0.327000 0.21459 1.014000 0.39417 0.296000 0.19083 0.475000 0.33008 0.951000 0.38953 0.000000 0.05858 1.0:0.0:0.0:0.0 8.5094 0.33208 0.481469 . . . . . . . . . . . . .
|
|
|
3 1 69134 A G E G 58997 OR4F5 Q8NH21 OR4F5_HUMAN 15 . + GAA . 2 0 . ENSG00000186092 ENST00000534990;ENST00000335137 63;15 ENSP00000334393:E15G ENSP00000334393:E15G 0.09 0.49607 T 0.0 0.02656 B 0.001 0.04013 B 0.263780 0.15411 N 0.998383 0.23043 N 2.055 0.67517 M 7.4 0.00444 T -0.9720 0.37103 T 0.0013 0.00412 T 10 -0.469020 0.04445 1.834 2.31 2.31 0.28768 0.327000 0.21459 1.014000 0.39417 0.296000 0.19083 0.475000 0.33008 0.951000 0.38953 0.000000 0.05858 1.0:0.0:0.0:0.0 8.5094 0.33208 0.481469 . . . . . . . . . . . . .
|
|
|
4 1 69134 A T E V 58997 OR4F5 Q8NH21 OR4F5_HUMAN 15 . + GAA . 2 0 . ENSG00000186092 ENST00000534990;ENST00000335137 63;15 ENSP00000334393:E15V ENSP00000334393:E15V 0.03 0.62326 D 0.308 0.31100 B 0.18 0.34346 B 0.263780 0.15411 U 0.996706 0.23838 N 2.57 0.82056 M 7.39 0.00446 T -1.0029 0.28902 T 0.0017 0.00524 T 10 0.661265 0.14645 7.544 2.31 2.31 0.28768 0.327000 0.21459 1.014000 0.39417 0.296000 0.19083 0.475000 0.33008 0.951000 0.38953 0.000000 0.05858 1.0:0.0:0.0:0.0 8.5094 0.33208 0.481469 . . . . . . . . . . . . .
|
|
|
5 4 100239319 T A H L 100458342 ADH1B A8MYN5 . 8 . - CAC -1.2513 2 0 C ENSG00000196616 ENST00000305046;ENST00000394887;ENST00000412614 48;8;48 ENSP00000306606:H48L ENSP00000306606:H48L;ENSP00000378351:H8L 0 0.87932 D 0.021 0.17268 B 0.009 0.13407 B 0.001009 0.40818 N 0.962682 0.39176 D 1.11 0.37507 L 3.73;3.49 0.05139 T;T -1.0300 0.19614 T 0.0167 0.06508 T 10 2.521929 0.44866 14.39 4.41 3.57 0.40892 -0.215000 0.12644 0.318000 0.23185 2.012000 0.40932 0.849000 0.48306 0.053000 0.19242 0.997000 0.39634 0.0:0.8397:0.0:0.1603 10.5345 0.44996 0.280785 . . . . . . . . . . . . .
|
|
|
6 4 100239319 T C H R 100458342 ADH1B A8MYN5 . 8 . - CAC -1.2513 2 0 C ENSG00000196616 ENST00000305046;ENST00000394887;ENST00000412614 48;8;48 ENSP00000306606:H48R ENSP00000306606:H48R;ENSP00000378351:H8R 0.15 0.41790 T 0.0 0.02656 B 0.0 0.01281 B 0.001009 0.40818 N 0.848429 0.29591 P . . . 3.8;3.52 0.04970 T;T -0.9979 0.30416 T 0.0000 0.00012 T 8 0.445290 0.12164 6.418 4.41 3.57 0.40892 -0.215000 0.12644 0.318000 0.23185 2.012000 0.40932 0.849000 0.48306 0.053000 0.19242 0.997000 0.39634 0.0:0.8397:0.0:0.1603 10.5345 0.44996 0.280785 rs1229984;rs1789884;rs11537716;rs17028836;rs17856968;rs52797169;rs57624638;rs1229984 1723 0.7889194139194139 492 1.0 744 0.9815303430079155 332 0.9171270718232044 155 0.270979020979021 0.983886 0.953023
|
|
|
7 4 100239319 T G H P 100458342 ADH1B A8MYN5 . 8 . - CAC -1.2513 2 0 C ENSG00000196616 ENST00000305046;ENST00000394887;ENST00000412614 48;8;48 ENSP00000306606:H48P ENSP00000306606:H48P;ENSP00000378351:H8P 0 0.87932 D 0.0 0.02656 B 0.002 0.06405 B 0.001009 0.40818 N 0.961891 0.39133 D 0.42 0.16602 N 3.72;3.47 0.05258 T;T -0.9816 0.34750 T 0.0130 0.04815 T 10 2.210304 0.39003 13.35 4.41 3.57 0.40892 -0.215000 0.12644 0.318000 0.23185 2.012000 0.40932 0.849000 0.48306 0.053000 0.19242 0.997000 0.39634 0.0:0.8397:0.0:0.1603 10.5345 0.44996 0.280785 . . . . . . . . . . . . .
|
