Mercurial > repos > iuc > snpsift_genesets

comparison snpSift_geneSets.xml @ 2:9ba6e2c298ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift commit 44b3b8a31f9f912a3b754aef1d467a90a4ed3504
author iuc
date Mon, 19 Sep 2016 14:43:55 -0400
parents 0af41de4eda1
children 847db7b39bdc
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1:0af41de4eda1 2:9ba6e2c298ab
8 </macros> 8 </macros>
9 <expand macro="requirements" /> 9 <expand macro="requirements" />
10 <expand macro="stdio" /> 10 <expand macro="stdio" />
11 <expand macro="version_command" /> 11 <expand macro="version_command" />
12 <command><![CDATA[ 12 <command><![CDATA[
13 @CONDA_SNPEFF_JAR_PATH@ &&
13 java -Xmx2G -jar "\$SNPEFF_JAR_PATH/SnpSift.jar" geneSets -v 14 java -Xmx2G -jar "\$SNPEFF_JAR_PATH/SnpSift.jar" geneSets -v
14 #if $db_opts.db_opts_selector == "db" 15 #if $db_opts.db_opts_selector == "db"
15 "${db_opts.database.fields.path}" 16 "${db_opts.database.fields.path}"
16 #elif $db_opts.db_opts_selector == "histdb" 17 #elif $db_opts.db_opts_selector == "histdb"
17 "$db_opts.histdb" 18 "$db_opts.histdb"