Mercurial > repos > iuc > snpsift_genesets
diff snpSift_geneSets.xml @ 3:847db7b39bdc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpsift/snpsift_genesets/ commit d12355cea76843e3ed6f09d96c3e9fe22afe4a4f
| author | iuc |
|---|---|
| date | Mon, 05 Dec 2016 12:06:09 -0500 |
| parents | 9ba6e2c298ab |
| children | d12a810c837e |
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--- a/snpSift_geneSets.xml Mon Sep 19 14:43:55 2016 -0400 +++ b/snpSift_geneSets.xml Mon Dec 05 12:06:09 2016 -0500 @@ -1,4 +1,4 @@ -<tool id="snpSift_geneSets" name="SnpSift GeneSets" version="@WRAPPER_VERSION@.0"> +<tool id="snpSift_geneSets" name="SnpSift GeneSets" version="@WRAPPER_VERSION@.1"> <description>Annotating GeneSets, such as Gene Ontology, KEGG, Reactome</description> <!-- You can change the amount of memory used, just change the -Xmx parameter (e.g. use -Xmx2G for 2Gb of memory) @@ -10,8 +10,8 @@ <expand macro="stdio" /> <expand macro="version_command" /> <command><![CDATA[ - @CONDA_SNPEFF_JAR_PATH@ && - java -Xmx2G -jar "\$SNPEFF_JAR_PATH/SnpSift.jar" geneSets -v + @CONDA_SNPSIFT_JAR_PATH@ && + java -Xmx2G -jar "\$SNPSIFT_JAR_PATH/SnpSift.jar" geneSets -v #if $db_opts.db_opts_selector == "db" "${db_opts.database.fields.path}" #elif $db_opts.db_opts_selector == "histdb" @@ -55,14 +55,7 @@ @EXTERNAL_DOCUMENTATION@ -@CITATION_SECTION@ - -For `MSigDB`_, please cite |Subramanian2005|_. - .. _MSigDB: http://www.broadinstitute.org/gsea/msigdb/ -.. |Subramanian2005| replace:: Subramanian, A., *et al.* (2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. *Proc. Natl. Acad. Sci. U.S.A.* 102(43), 15545-15550 -.. _Subramanian2005: http://www.pnas.org/content/102/43/15545 - ]]> </help> <expand macro="citations">