diff snpSift_macros.xml @ 0:9e6fa49c1077 draft

Uploaded
author iuc
date Thu, 22 Jan 2015 08:58:01 -0500
parents
children 0af41de4eda1
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/snpSift_macros.xml	Thu Jan 22 08:58:01 2015 -0500
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+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="4.0">snpEff</requirement>
+        </requirements>
+    </xml>
+  <xml name="stdio">
+    <stdio>
+        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
+        <exit_code range="1:"  level="fatal" description="Error" />
+    </stdio>
+  </xml>
+  <token name="@EXTERNAL_DOCUMENTATION@">
+
+For details about this tool, please go to:
+	http://snpeff.sourceforge.net/SnpEff_manual.html
+
+  </token>
+  <token name="@CITATION_SECTION@">------
+
+**Citation**
+
+For the underlying tool, please cite the following two publications:
+
+SnpSift citation:
+"Using Drosophila melanogaster as a model for genotoxic chemical mutational studies with a new program, SnpSift", Cingolani, P., et. al., Frontiers in Genetics, 3:35, 2012.
+
+  </token>
+  <xml name="citations">
+      <citations>
+        <citation type="doi">10.3389/fgene.2012.00035</citation>
+        <yield />
+      </citations>
+  </xml>
+</macros>