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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
author iuc
date Wed, 11 Sep 2019 10:42:22 -0400
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ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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1 <tool id="socru" name="socru" version="@VERSION@">
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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2 <description>Calculate the order and orientation of complete bacterial genomes</description>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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3 <macros>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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4 <import>macros.xml</import>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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5 </macros>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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6 <expand macro="requirements" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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7 <expand macro="version_command" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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8 <command detect_errors="exit_code"><![CDATA[
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9 #import re
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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10 #import os.path
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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11
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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12 #set $_input_file = re.sub(r'(\s|\(|\)|:|!)', '_', str($assembly.element_identifier))
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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13 ln -s '${assembly}' ${_input_file} &&
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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14
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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15 socru
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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16
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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17 --threads \${GALAXY_SLOTS:-4}
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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18 --top_blast_hits top_blast_hits.tsv
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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20 #if str($opt_args.max_bases_from_ends) != ""
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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21 --max_bases_from_ends $opt_args.max_bases_from_ends
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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22 #end if
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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23
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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24 $opt_args.not_circular
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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25
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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26 --min_bit_score $opt_args.min_bit_score
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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27 --min_alignment_length $opt_args.min_alignment_length
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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28
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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29 '$species'
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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30 ${_input_file}
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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31 > '$output'
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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32 ]]> </command>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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33
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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34 <inputs>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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35 <param name="assembly" type="data" format="fasta,fasta.gz" label="Select fasta dataset" help=""/>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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36 <param name="species" type="select" label="Select a species">
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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37 <option value="Acetobacter_ascendens">Acetobacter_ascendens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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38 <option value="Acetobacter_pasteurianus">Acetobacter_pasteurianus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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39 <option value="Achromobacter_denitrificans">Achromobacter_denitrificans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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40 <option value="Achromobacter_insolitus">Achromobacter_insolitus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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41 <option value="Achromobacter_spanius">Achromobacter_spanius</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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42 <option value="Achromobacter_xylosoxidans">Achromobacter_xylosoxidans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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43 <option value="Acidipropionibacterium_acidipropionici">Acidipropionibacterium_acidipropionici</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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44 <option value="Acidipropionibacterium_jensenii">Acidipropionibacterium_jensenii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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45 <option value="Acidovorax_carolinensis">Acidovorax_carolinensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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46 <option value="Acidovorax_sp.">Acidovorax_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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47 <option value="Acinetobacter_baumannii">Acinetobacter_baumannii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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48 <option value="Acinetobacter_haemolyticus">Acinetobacter_haemolyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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49 <option value="Acinetobacter_johnsonii">Acinetobacter_johnsonii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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50 <option value="Acinetobacter_junii">Acinetobacter_junii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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51 <option value="Acinetobacter_nosocomialis">Acinetobacter_nosocomialis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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52 <option value="Acinetobacter_sp.">Acinetobacter_sp.</option>
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53 <option value="Actinoalloteichus_sp.">Actinoalloteichus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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54 <option value="Actinobacillus_pleuropneumoniae">Actinobacillus_pleuropneumoniae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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55 <option value="Actinomyces_sp.">Actinomyces_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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56 <option value="Actinoplanes_sp.">Actinoplanes_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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57 <option value="Aeromonas_caviae">Aeromonas_caviae</option>
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58 <option value="Aeromonas_hydrophila">Aeromonas_hydrophila</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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59 <option value="Aeromonas_salmonicida">Aeromonas_salmonicida</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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60 <option value="Aeromonas_sp.">Aeromonas_sp.</option>
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61 <option value="Aeromonas_veronii">Aeromonas_veronii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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62 <option value="Aggregatibacter_actinomycetemcomitans">Aggregatibacter_actinomycetemcomitans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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63 <option value="Aggregatibacter_aphrophilus">Aggregatibacter_aphrophilus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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64 <option value="Agrobacterium_tumefaciens">Agrobacterium_tumefaciens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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65 <option value="Akkermansia_muciniphila">Akkermansia_muciniphila</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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66 <option value="Alcaligenes_faecalis">Alcaligenes_faecalis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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67 <option value="Alteromonas_macleodii">Alteromonas_macleodii</option>
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68 <option value="Alteromonas_mediterranea">Alteromonas_mediterranea</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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69 <option value="Alteromonas_sp.">Alteromonas_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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70 <option value="Alteromonas_stellipolaris">Alteromonas_stellipolaris</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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71 <option value="Amycolatopsis_mediterranei">Amycolatopsis_mediterranei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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72 <option value="Anoxybacillus_flavithermus">Anoxybacillus_flavithermus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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73 <option value="Aquimarina_sp.">Aquimarina_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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74 <option value="Arcobacter_butzleri">Arcobacter_butzleri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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75 <option value="Arthrobacter_alpinus">Arthrobacter_alpinus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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76 <option value="Arthrobacter_sp.">Arthrobacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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77 <option value="Azoarcus_sp.">Azoarcus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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78 <option value="Azotobacter_vinelandii">Azotobacter_vinelandii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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79 <option value="Bacillus_altitudinis">Bacillus_altitudinis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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80 <option value="Bacillus_amyloliquefaciens">Bacillus_amyloliquefaciens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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81 <option value="Bacillus_anthracis">Bacillus_anthracis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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diff changeset
82 <option value="Bacillus_atrophaeus">Bacillus_atrophaeus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
83 <option value="Bacillus_cellulasensis">Bacillus_cellulasensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
84 <option value="Bacillus_cereus">Bacillus_cereus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
85 <option value="Bacillus_clausii">Bacillus_clausii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
86 <option value="Bacillus_coagulans">Bacillus_coagulans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
87 <option value="Bacillus_cytotoxicus">Bacillus_cytotoxicus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
88 <option value="Bacillus_licheniformis">Bacillus_licheniformis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
89 <option value="Bacillus_megaterium">Bacillus_megaterium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
90 <option value="Bacillus_mycoides">Bacillus_mycoides</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
91 <option value="Bacillus_paralicheniformis">Bacillus_paralicheniformis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
92 <option value="Bacillus_pumilus">Bacillus_pumilus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
93 <option value="Bacillus_safensis">Bacillus_safensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
94 <option value="Bacillus_sp.">Bacillus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
95 <option value="Bacillus_subtilis">Bacillus_subtilis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
96 <option value="Bacillus_thuringiensis">Bacillus_thuringiensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
97 <option value="Bacillus_velezensis">Bacillus_velezensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
98 <option value="Bacteroides_fragilis">Bacteroides_fragilis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
99 <option value="Bibersteinia_trehalosi">Bibersteinia_trehalosi</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
100 <option value="Bifidobacterium_adolescentis">Bifidobacterium_adolescentis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
101 <option value="Bifidobacterium_bifidum">Bifidobacterium_bifidum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
102 <option value="Bifidobacterium_breve">Bifidobacterium_breve</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
103 <option value="Bifidobacterium_longum">Bifidobacterium_longum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
104 <option value="Bifidobacterium_pseudolongum">Bifidobacterium_pseudolongum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
105 <option value="Blastochloris_viridis">Blastochloris_viridis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
106 <option value="Bordetella_avium">Bordetella_avium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
107 <option value="Bordetella_bronchiseptica">Bordetella_bronchiseptica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
108 <option value="Bordetella_genomosp.">Bordetella_genomosp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
109 <option value="Bordetella_hinzii">Bordetella_hinzii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
110 <option value="Bordetella_parapertussis">Bordetella_parapertussis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
111 <option value="Bordetella_pertussis">Bordetella_pertussis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
112 <option value="Bordetella_sp.">Bordetella_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
113 <option value="Bordetella_trematum">Bordetella_trematum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
114 <option value="Brachybacterium_sp.">Brachybacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
115 <option value="Brevibacillus_laterosporus">Brevibacillus_laterosporus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
116 <option value="Brevibacterium_aurantiacum">Brevibacterium_aurantiacum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
117 <option value="Brochothrix_thermosphacta">Brochothrix_thermosphacta</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
118 <option value="Burkholderia_ambifaria">Burkholderia_ambifaria</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
119 <option value="Burkholderia_cenocepacia">Burkholderia_cenocepacia</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
120 <option value="Burkholderia_gladioli">Burkholderia_gladioli</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
121 <option value="Burkholderia_sp.">Burkholderia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
122 <option value="Burkholderia_ubonensis">Burkholderia_ubonensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
123 <option value="Burkholderia_vietnamiensis">Burkholderia_vietnamiensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
124 <option value="Calothrix_sp.">Calothrix_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
125 <option value="Campylobacter_coli">Campylobacter_coli</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
126 <option value="Campylobacter_concisus">Campylobacter_concisus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
127 <option value="Campylobacter_fetus">Campylobacter_fetus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
128 <option value="Campylobacter_iguaniorum">Campylobacter_iguaniorum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
129 <option value="Campylobacter_insulaenigrae">Campylobacter_insulaenigrae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
130 <option value="Campylobacter_jejuni">Campylobacter_jejuni</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
131 <option value="Campylobacter_lari">Campylobacter_lari</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
132 <option value="Campylobacter_sp.">Campylobacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
133 <option value="Candidatus_Arthromitus">Candidatus_Arthromitus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
134 <option value="Candidatus_Kinetoplastibacterium">Candidatus_Kinetoplastibacterium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
135 <option value="Candidatus_Liberibacter">Candidatus_Liberibacter</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
136 <option value="Capnocytophaga_canimorsus">Capnocytophaga_canimorsus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
137 <option value="Capnocytophaga_sp.">Capnocytophaga_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
138 <option value="Capnocytophaga_sputigena">Capnocytophaga_sputigena</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
139 <option value="Cedecea_neteri">Cedecea_neteri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
140 <option value="Cellulophaga_lytica">Cellulophaga_lytica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
141 <option value="Chromobacterium_sp.">Chromobacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
142 <option value="Chryseobacterium_indologenes">Chryseobacterium_indologenes</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
143 <option value="Chryseobacterium_shandongense">Chryseobacterium_shandongense</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
144 <option value="Chryseobacterium_sp.">Chryseobacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
145 <option value="Citrobacter_amalonaticus">Citrobacter_amalonaticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
146 <option value="Citrobacter_freundii">Citrobacter_freundii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
147 <option value="Citrobacter_koseri">Citrobacter_koseri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
148 <option value="Citrobacter_sp.">Citrobacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
149 <option value="Citrobacter_werkmanii">Citrobacter_werkmanii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
150 <option value="Clostridioides_difficile">Clostridioides_difficile</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
151 <option value="Clostridium_acetobutylicum">Clostridium_acetobutylicum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
152 <option value="Clostridium_beijerinckii">Clostridium_beijerinckii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
153 <option value="Clostridium_botulinum">Clostridium_botulinum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
154 <option value="Clostridium_butyricum">Clostridium_butyricum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
155 <option value="Clostridium_chauvoei">Clostridium_chauvoei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
156 <option value="Clostridium_kluyveri">Clostridium_kluyveri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
157 <option value="Clostridium_pasteurianum">Clostridium_pasteurianum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
158 <option value="Clostridium_perfringens">Clostridium_perfringens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
159 <option value="Clostridium_saccharobutylicum">Clostridium_saccharobutylicum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
160 <option value="Clostridium_sp.">Clostridium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
161 <option value="Clostridium_sporogenes">Clostridium_sporogenes</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
162 <option value="Collimonas_arenae">Collimonas_arenae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
163 <option value="Colwellia_sp.">Colwellia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
164 <option value="Corynebacterium_diphtheriae">Corynebacterium_diphtheriae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
165 <option value="Corynebacterium_glutamicum">Corynebacterium_glutamicum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
166 <option value="Corynebacterium_jeikeium">Corynebacterium_jeikeium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
167 <option value="Corynebacterium_kutscheri">Corynebacterium_kutscheri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
168 <option value="Corynebacterium_pseudotuberculosis">Corynebacterium_pseudotuberculosis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
169 <option value="Corynebacterium_sp.">Corynebacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
170 <option value="Corynebacterium_stationis">Corynebacterium_stationis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
171 <option value="Corynebacterium_striatum">Corynebacterium_striatum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
172 <option value="Corynebacterium_ulcerans">Corynebacterium_ulcerans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
173 <option value="Corynebacterium_urealyticum">Corynebacterium_urealyticum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
174 <option value="Cronobacter_sakazakii">Cronobacter_sakazakii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
175 <option value="Cupriavidus_necator">Cupriavidus_necator</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
176 <option value="Cupriavidus_sp.">Cupriavidus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
177 <option value="Cutibacterium_acnes">Cutibacterium_acnes</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
178 <option value="Desulfovibrio_vulgaris">Desulfovibrio_vulgaris</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
179 <option value="Dickeya_solani">Dickeya_solani</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
180 <option value="Dickeya_zeae">Dickeya_zeae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
181 <option value="Dokdonia_sp.">Dokdonia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
182 <option value="Edwardsiella_ictaluri">Edwardsiella_ictaluri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
183 <option value="Edwardsiella_tarda">Edwardsiella_tarda</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
184 <option value="Elizabethkingia_anophelis">Elizabethkingia_anophelis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
185 <option value="Elizabethkingia_meningoseptica">Elizabethkingia_meningoseptica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
186 <option value="Enterobacter_asburiae">Enterobacter_asburiae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
187 <option value="Enterobacter_cloacae">Enterobacter_cloacae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
188 <option value="Enterobacter_hormaechei">Enterobacter_hormaechei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
189 <option value="Enterobacter_roggenkampii">Enterobacter_roggenkampii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
190 <option value="Enterobacter_sp.">Enterobacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
191 <option value="Enterobacteriaceae_bacterium">Enterobacteriaceae_bacterium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
192 <option value="Enterococcus_durans">Enterococcus_durans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
193 <option value="Enterococcus_faecalis">Enterococcus_faecalis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
194 <option value="Enterococcus_faecium">Enterococcus_faecium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
195 <option value="Enterococcus_hirae">Enterococcus_hirae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
196 <option value="Enterococcus_mundtii">Enterococcus_mundtii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
197 <option value="Enterococcus_sp.">Enterococcus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
198 <option value="Erwinia_amylovora">Erwinia_amylovora</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
199 <option value="Erysipelothrix_rhusiopathiae">Erysipelothrix_rhusiopathiae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
200 <option value="Erysipelotrichaceae_bacterium">Erysipelotrichaceae_bacterium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
201 <option value="Escherichia_albertii">Escherichia_albertii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
202 <option value="Escherichia_coli">Escherichia_coli</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
203 <option value="Ethanoligenens_harbinense">Ethanoligenens_harbinense</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
204 <option value="Exiguobacterium_sp.">Exiguobacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
205 <option value="Faecalibacterium_prausnitzii">Faecalibacterium_prausnitzii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
206 <option value="Flavobacterium_columnare">Flavobacterium_columnare</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
207 <option value="Flavobacterium_psychrophilum">Flavobacterium_psychrophilum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
208 <option value="Flavobacterium_sp.">Flavobacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
209 <option value="Francisella_philomiragia">Francisella_philomiragia</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
210 <option value="Francisella_sp.">Francisella_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
211 <option value="Francisella_tularensis">Francisella_tularensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
212 <option value="Fusobacterium_hwasookii">Fusobacterium_hwasookii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
213 <option value="Fusobacterium_necrophorum">Fusobacterium_necrophorum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
214 <option value="Fusobacterium_nucleatum">Fusobacterium_nucleatum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
215 <option value="Fusobacterium_periodonticum">Fusobacterium_periodonticum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
216 <option value="Fusobacterium_varium">Fusobacterium_varium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
217 <option value="Geobacillus_sp.">Geobacillus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
218 <option value="Geobacillus_thermodenitrificans">Geobacillus_thermodenitrificans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
219 <option value="Geobacillus_thermoleovorans">Geobacillus_thermoleovorans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
220 <option value="Glaesserella_parasuis">Glaesserella_parasuis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
221 <option value="Gluconobacter_oxydans">Gluconobacter_oxydans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
222 <option value="Gordonia_sp.">Gordonia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
223 <option value="Granulibacter_bethesdensis">Granulibacter_bethesdensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
224 <option value="Haemophilus_haemolyticus">Haemophilus_haemolyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
225 <option value="Haemophilus_influenzae">Haemophilus_influenzae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
226 <option value="Haemophilus_parainfluenzae">Haemophilus_parainfluenzae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
227 <option value="Hafnia_alvei">Hafnia_alvei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
228 <option value="Halomonas_sp.">Halomonas_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
229 <option value="Herbaspirillum_seropedicae">Herbaspirillum_seropedicae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
230 <option value="Histophilus_somni">Histophilus_somni</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
231 <option value="Hungateiclostridium_thermocellum">Hungateiclostridium_thermocellum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
232 <option value="Hymenobacter_sp.">Hymenobacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
233 <option value="Jonesia_denitrificans">Jonesia_denitrificans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
234 <option value="Ketogulonicigenium_vulgare">Ketogulonicigenium_vulgare</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
235 <option value="Klebsiella_aerogenes">Klebsiella_aerogenes</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
236 <option value="Klebsiella_michiganensis">Klebsiella_michiganensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
237 <option value="Klebsiella_oxytoca">Klebsiella_oxytoca</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
238 <option value="Klebsiella_pneumoniae">Klebsiella_pneumoniae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
239 <option value="Klebsiella_quasipneumoniae">Klebsiella_quasipneumoniae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
240 <option value="Klebsiella_sp.">Klebsiella_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
241 <option value="Klebsiella_variicola">Klebsiella_variicola</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
242 <option value="Lachnospiraceae_bacterium">Lachnospiraceae_bacterium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
243 <option value="Lactobacillus_acidophilus">Lactobacillus_acidophilus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
244 <option value="Lactobacillus_amylovorus">Lactobacillus_amylovorus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
245 <option value="Lactobacillus_backii">Lactobacillus_backii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
246 <option value="Lactobacillus_brevis">Lactobacillus_brevis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
247 <option value="Lactobacillus_casei">Lactobacillus_casei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
248 <option value="Lactobacillus_curvatus">Lactobacillus_curvatus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
249 <option value="Lactobacillus_delbrueckii">Lactobacillus_delbrueckii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
250 <option value="Lactobacillus_fermentum">Lactobacillus_fermentum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
251 <option value="Lactobacillus_gasseri">Lactobacillus_gasseri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
252 <option value="Lactobacillus_helveticus">Lactobacillus_helveticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
253 <option value="Lactobacillus_johnsonii">Lactobacillus_johnsonii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
254 <option value="Lactobacillus_paracasei">Lactobacillus_paracasei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
255 <option value="Lactobacillus_paracollinoides">Lactobacillus_paracollinoides</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
256 <option value="Lactobacillus_pentosus">Lactobacillus_pentosus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
257 <option value="Lactobacillus_plantarum">Lactobacillus_plantarum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
258 <option value="Lactobacillus_reuteri">Lactobacillus_reuteri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
259 <option value="Lactobacillus_rhamnosus">Lactobacillus_rhamnosus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
260 <option value="Lactobacillus_sakei">Lactobacillus_sakei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
261 <option value="Lactobacillus_salivarius">Lactobacillus_salivarius</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
262 <option value="Lactobacillus_sp.">Lactobacillus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
263 <option value="Lactococcus_garvieae">Lactococcus_garvieae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
264 <option value="Lactococcus_lactis">Lactococcus_lactis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
265 <option value="Legionella_longbeachae">Legionella_longbeachae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
266 <option value="Legionella_pneumophila">Legionella_pneumophila</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
267 <option value="Legionella_sainthelensi">Legionella_sainthelensi</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
268 <option value="Lelliottia_amnigena">Lelliottia_amnigena</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
269 <option value="Leptolyngbya_boryana">Leptolyngbya_boryana</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
270 <option value="Leptotrichia_sp.">Leptotrichia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
271 <option value="Leuconostoc_gelidum">Leuconostoc_gelidum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
272 <option value="Leuconostoc_mesenteroides">Leuconostoc_mesenteroides</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
273 <option value="Listeria_ivanovii">Listeria_ivanovii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
274 <option value="Listeria_monocytogenes">Listeria_monocytogenes</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
275 <option value="Lysinibacillus_sphaericus">Lysinibacillus_sphaericus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
276 <option value="Mannheimia_haemolytica">Mannheimia_haemolytica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
277 <option value="Mannheimia_varigena">Mannheimia_varigena</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
278 <option value="Marinobacter_sp.">Marinobacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
279 <option value="Massilia_sp.">Massilia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
280 <option value="Megasphaera_elsdenii">Megasphaera_elsdenii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
281 <option value="Melissococcus_plutonius">Melissococcus_plutonius</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
282 <option value="Methylobacterium_sp.">Methylobacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
283 <option value="Methylorubrum_extorquens">Methylorubrum_extorquens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
284 <option value="Moraxella_bovoculi">Moraxella_bovoculi</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
285 <option value="Moraxella_catarrhalis">Moraxella_catarrhalis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
286 <option value="Moraxella_osloensis">Moraxella_osloensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
287 <option value="Morganella_morganii">Morganella_morganii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
288 <option value="Mucilaginibacter_sp.">Mucilaginibacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
289 <option value="Neisseria_elongata">Neisseria_elongata</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
290 <option value="Neisseria_gonorrhoeae">Neisseria_gonorrhoeae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
291 <option value="Neisseria_lactamica">Neisseria_lactamica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
292 <option value="Neisseria_meningitidis">Neisseria_meningitidis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
293 <option value="Neisseria_sp.">Neisseria_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
294 <option value="Nocardia_farcinica">Nocardia_farcinica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
295 <option value="Nocardiopsis_dassonvillei">Nocardiopsis_dassonvillei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
296 <option value="Nonlabens_sp.">Nonlabens_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
297 <option value="Nostoc_sp.">Nostoc_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
298 <option value="Novosphingobium_sp.">Novosphingobium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
299 <option value="Oblitimonas_alkaliphila">Oblitimonas_alkaliphila</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
300 <option value="Paenibacillus_larvae">Paenibacillus_larvae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
301 <option value="Paenibacillus_mucilaginosus">Paenibacillus_mucilaginosus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
302 <option value="Paenibacillus_polymyxa">Paenibacillus_polymyxa</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
303 <option value="Paenibacillus_sp.">Paenibacillus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
304 <option value="Pandoraea_apista">Pandoraea_apista</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
305 <option value="Pandoraea_pnomenusa">Pandoraea_pnomenusa</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
306 <option value="Pantoea_agglomerans">Pantoea_agglomerans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
307 <option value="Pantoea_ananatis">Pantoea_ananatis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
308 <option value="Pantoea_sp.">Pantoea_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
309 <option value="Pantoea_vagans">Pantoea_vagans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
310 <option value="Paraburkholderia_caribensis">Paraburkholderia_caribensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
311 <option value="Paracoccus_yeei">Paracoccus_yeei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
312 <option value="Parageobacillus_thermoglucosidasius">Parageobacillus_thermoglucosidasius</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
313 <option value="Parvimonas_micra">Parvimonas_micra</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
314 <option value="Pasteurella_multocida">Pasteurella_multocida</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
315 <option value="Pectobacterium_atrosepticum">Pectobacterium_atrosepticum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
316 <option value="Pectobacterium_carotovorum">Pectobacterium_carotovorum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
317 <option value="Pectobacterium_parmentieri">Pectobacterium_parmentieri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
318 <option value="Pediococcus_acidilactici">Pediococcus_acidilactici</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
319 <option value="Pediococcus_claussenii">Pediococcus_claussenii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
320 <option value="Pediococcus_damnosus">Pediococcus_damnosus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
321 <option value="Pediococcus_pentosaceus">Pediococcus_pentosaceus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
322 <option value="Phaeobacter_gallaeciensis">Phaeobacter_gallaeciensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
323 <option value="Phaeobacter_inhibens">Phaeobacter_inhibens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
324 <option value="Phaeobacter_piscinae">Phaeobacter_piscinae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
325 <option value="Photobacterium_damselae">Photobacterium_damselae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
326 <option value="Photorhabdus_laumondii">Photorhabdus_laumondii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
327 <option value="Piscirickettsia_salmonis">Piscirickettsia_salmonis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
328 <option value="Planococcus_sp.">Planococcus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
329 <option value="Plantactinospora_sp.">Plantactinospora_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
330 <option value="Porphyromonas_gingivalis">Porphyromonas_gingivalis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
331 <option value="Proteus_mirabilis">Proteus_mirabilis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
332 <option value="Providencia_rettgeri">Providencia_rettgeri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
333 <option value="Providencia_stuartii">Providencia_stuartii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
334 <option value="Pseudoalteromonas_luteoviolacea">Pseudoalteromonas_luteoviolacea</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
335 <option value="Pseudoalteromonas_piscicida">Pseudoalteromonas_piscicida</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
336 <option value="Pseudoalteromonas_sp.">Pseudoalteromonas_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
337 <option value="Pseudomonas_aeruginosa">Pseudomonas_aeruginosa</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
338 <option value="Pseudomonas_brassicacearum">Pseudomonas_brassicacearum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
339 <option value="Pseudomonas_chlororaphis">Pseudomonas_chlororaphis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
340 <option value="Pseudomonas_entomophila">Pseudomonas_entomophila</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
341 <option value="Pseudomonas_fluorescens">Pseudomonas_fluorescens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
342 <option value="Pseudomonas_frederiksbergensis">Pseudomonas_frederiksbergensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
343 <option value="Pseudomonas_koreensis">Pseudomonas_koreensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
344 <option value="Pseudomonas_mendocina">Pseudomonas_mendocina</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
345 <option value="Pseudomonas_monteilii">Pseudomonas_monteilii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
346 <option value="Pseudomonas_orientalis">Pseudomonas_orientalis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
347 <option value="Pseudomonas_parafulva">Pseudomonas_parafulva</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
348 <option value="Pseudomonas_protegens">Pseudomonas_protegens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
349 <option value="Pseudomonas_putida">Pseudomonas_putida</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
350 <option value="Pseudomonas_sp.">Pseudomonas_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
351 <option value="Pseudomonas_stutzeri">Pseudomonas_stutzeri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
352 <option value="Pseudomonas_synxantha">Pseudomonas_synxantha</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
353 <option value="Pseudomonas_syringae">Pseudomonas_syringae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
354 <option value="Pseudonocardia_sp.">Pseudonocardia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
355 <option value="Psychrobacter_sp.">Psychrobacter_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
356 <option value="Rahnella_aquatilis">Rahnella_aquatilis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
357 <option value="Ralstonia_pickettii">Ralstonia_pickettii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
358 <option value="Raoultella_ornithinolytica">Raoultella_ornithinolytica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
359 <option value="Rhizobium_etli">Rhizobium_etli</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
360 <option value="Rhizobium_leguminosarum">Rhizobium_leguminosarum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
361 <option value="Rhizobium_phaseoli">Rhizobium_phaseoli</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
362 <option value="Rhizobium_sp.">Rhizobium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
363 <option value="Rhodobacter_sphaeroides">Rhodobacter_sphaeroides</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
364 <option value="Rhodococcus_opacus">Rhodococcus_opacus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
365 <option value="Rhodococcus_ruber">Rhodococcus_ruber</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
366 <option value="Rhodococcus_sp.">Rhodococcus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
367 <option value="Rhodovulum_sulfidophilum">Rhodovulum_sulfidophilum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
368 <option value="Riemerella_anatipestifer">Riemerella_anatipestifer</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
369 <option value="Ruegeria_sp.">Ruegeria_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
370 <option value="Salmonella_bongori">Salmonella_bongori</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
371 <option value="Salmonella_enterica">Salmonella_enterica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
372 <option value="Selenomonas_sp.">Selenomonas_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
373 <option value="Serratia_fonticola">Serratia_fonticola</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
374 <option value="Serratia_liquefaciens">Serratia_liquefaciens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
375 <option value="Serratia_marcescens">Serratia_marcescens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
376 <option value="Serratia_plymuthica">Serratia_plymuthica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
377 <option value="Serratia_rubidaea">Serratia_rubidaea</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
378 <option value="Serratia_sp.">Serratia_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
379 <option value="Shewanella_baltica">Shewanella_baltica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
380 <option value="Shewanella_putrefaciens">Shewanella_putrefaciens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
381 <option value="Shewanella_sp.">Shewanella_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
382 <option value="Shimwellia_blattae">Shimwellia_blattae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
383 <option value="Sinorhizobium_fredii">Sinorhizobium_fredii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
384 <option value="Sinorhizobium_meliloti">Sinorhizobium_meliloti</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
385 <option value="Sorangium_cellulosum">Sorangium_cellulosum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
386 <option value="Sphingobacterium_sp.">Sphingobacterium_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
387 <option value="Sphingobium_yanoikuyae">Sphingobium_yanoikuyae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
388 <option value="Sporosarcina_sp.">Sporosarcina_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
389 <option value="Sporosarcina_ureae">Sporosarcina_ureae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
390 <option value="Staphylococcus_argenteus">Staphylococcus_argenteus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
391 <option value="Staphylococcus_aureus">Staphylococcus_aureus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
392 <option value="Staphylococcus_capitis">Staphylococcus_capitis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
393 <option value="Staphylococcus_caprae">Staphylococcus_caprae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
394 <option value="Staphylococcus_condimenti">Staphylococcus_condimenti</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
395 <option value="Staphylococcus_epidermidis">Staphylococcus_epidermidis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
396 <option value="Staphylococcus_equorum">Staphylococcus_equorum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
397 <option value="Staphylococcus_haemolyticus">Staphylococcus_haemolyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
398 <option value="Staphylococcus_hyicus">Staphylococcus_hyicus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
399 <option value="Staphylococcus_lugdunensis">Staphylococcus_lugdunensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
400 <option value="Staphylococcus_nepalensis">Staphylococcus_nepalensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
401 <option value="Staphylococcus_pseudintermedius">Staphylococcus_pseudintermedius</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
402 <option value="Staphylococcus_saprophyticus">Staphylococcus_saprophyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
403 <option value="Staphylococcus_schleiferi">Staphylococcus_schleiferi</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
404 <option value="Staphylococcus_simulans">Staphylococcus_simulans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
405 <option value="Staphylococcus_sp.">Staphylococcus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
406 <option value="Staphylococcus_warneri">Staphylococcus_warneri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
407 <option value="Staphylococcus_xylosus">Staphylococcus_xylosus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
408 <option value="Stenotrophomonas_maltophilia">Stenotrophomonas_maltophilia</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
409 <option value="Stenotrophomonas_sp.">Stenotrophomonas_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
410 <option value="Streptococcus_agalactiae">Streptococcus_agalactiae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
411 <option value="Streptococcus_anginosus">Streptococcus_anginosus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
412 <option value="Streptococcus_constellatus">Streptococcus_constellatus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
413 <option value="Streptococcus_cristatus">Streptococcus_cristatus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
414 <option value="Streptococcus_dysgalactiae">Streptococcus_dysgalactiae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
415 <option value="Streptococcus_equi">Streptococcus_equi</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
416 <option value="Streptococcus_equinus">Streptococcus_equinus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
417 <option value="Streptococcus_gallolyticus">Streptococcus_gallolyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
418 <option value="Streptococcus_gordonii">Streptococcus_gordonii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
419 <option value="Streptococcus_iniae">Streptococcus_iniae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
420 <option value="Streptococcus_intermedius">Streptococcus_intermedius</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
421 <option value="Streptococcus_lutetiensis">Streptococcus_lutetiensis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
422 <option value="Streptococcus_mitis">Streptococcus_mitis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
423 <option value="Streptococcus_mutans">Streptococcus_mutans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
424 <option value="Streptococcus_oralis">Streptococcus_oralis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
425 <option value="Streptococcus_pneumoniae">Streptococcus_pneumoniae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
426 <option value="Streptococcus_pyogenes">Streptococcus_pyogenes</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
427 <option value="Streptococcus_salivarius">Streptococcus_salivarius</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
428 <option value="Streptococcus_sanguinis">Streptococcus_sanguinis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
429 <option value="Streptococcus_sobrinus">Streptococcus_sobrinus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
430 <option value="Streptococcus_sp.">Streptococcus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
431 <option value="Streptococcus_suis">Streptococcus_suis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
432 <option value="Streptococcus_thermophilus">Streptococcus_thermophilus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
433 <option value="Streptococcus_uberis">Streptococcus_uberis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
434 <option value="Streptomyces_albulus">Streptomyces_albulus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
435 <option value="Streptomyces_albus">Streptomyces_albus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
436 <option value="Streptomyces_hygroscopicus">Streptomyces_hygroscopicus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
437 <option value="Streptomyces_lydicus">Streptomyces_lydicus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
438 <option value="Streptomyces_sp.">Streptomyces_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
439 <option value="Streptomyces_venezuelae">Streptomyces_venezuelae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
440 <option value="Sulfurospirillum_sp.">Sulfurospirillum_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
441 <option value="Tatlockia_micdadei">Tatlockia_micdadei</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
442 <option value="Taylorella_equigenitalis">Taylorella_equigenitalis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
443 <option value="Tetragenococcus_halophilus">Tetragenococcus_halophilus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
444 <option value="Thalassolituus_oleivorans">Thalassolituus_oleivorans</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
445 <option value="Thermoclostridium_stercorarium">Thermoclostridium_stercorarium</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
446 <option value="Veillonella_parvula">Veillonella_parvula</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
447 <option value="Vibrio_alginolyticus">Vibrio_alginolyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
448 <option value="Vibrio_anguillarum">Vibrio_anguillarum</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
449 <option value="Vibrio_campbellii">Vibrio_campbellii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
450 <option value="Vibrio_cholerae">Vibrio_cholerae</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
451 <option value="Vibrio_coralliilyticus">Vibrio_coralliilyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
452 <option value="Vibrio_diabolicus">Vibrio_diabolicus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
453 <option value="Vibrio_fluvialis">Vibrio_fluvialis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
454 <option value="Vibrio_harveyi">Vibrio_harveyi</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
455 <option value="Vibrio_natriegens">Vibrio_natriegens</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
456 <option value="Vibrio_owensii">Vibrio_owensii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
457 <option value="Vibrio_parahaemolyticus">Vibrio_parahaemolyticus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
458 <option value="Vibrio_sp.">Vibrio_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
459 <option value="Vibrio_vulnificus">Vibrio_vulnificus</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
460 <option value="Virgibacillus_sp.">Virgibacillus_sp.</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
461 <option value="Weissella_ceti">Weissella_ceti</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
462 <option value="Weissella_cibaria">Weissella_cibaria</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
463 <option value="Yersinia_enterocolitica">Yersinia_enterocolitica</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
464 <option value="Yersinia_frederiksenii">Yersinia_frederiksenii</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
465 <option value="Yersinia_intermedia">Yersinia_intermedia</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
466 <option value="Yersinia_pestis">Yersinia_pestis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
467 <option value="Yersinia_pseudotuberculosis">Yersinia_pseudotuberculosis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
468 <option value="Yersinia_ruckeri">Yersinia_ruckeri</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
469 <option value="Zymomonas_mobilis">Zymomonas_mobilis</option>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
470 </param>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
471 <section name="opt_args" title="Optional Arguments">
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
472 <param argument="--max_bases_from_ends" type="integer" value="" optional="True" label="Only look at this number of bases from start and end of fragment" help="Take this number of bases from the start and end of a fragment and compare to the database. This is an experimental feature, it hasn't performed as expected and may be removed at a later point. (default: None)" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
473 <param argument="--min_bit_score" type="integer" value="100" label="Minimum bit score" help="Internally blastn is used and this allows you to specify the minimum bit score for a hit to be considered, since blast will throw up a lot of small hits (default: 100)" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
474 <param argument="--min_alignment_length" type="integer" value="100" label="Minimum alignment length " help="Only consider blast alignment lengths above this value. Remember that there can be some very short fragments between rrns, so you'll need to know the approximate minimum fragment size (in bases) before increasing this value too high. (default: 100)" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
475 <param argument="--not_circular" type="boolean" truevalue="--not_circular" falsevalue="" checked="false" label="Assume chromosome is not circularised" help="(default: False)" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
476 </section>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
477 </inputs>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
parents:
diff changeset
478
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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479 <outputs>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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480 <data name="novel_profiles" format="tabular" label="${tool.name} on ${on_string}: Novel profiles" from_work_dir="profile.txt.novel"/>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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481 <data name="new_fragments" format="fasta" label="${tool.name} on ${on_string}: New fragments" from_work_dir="novel_fragments.fa"/>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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482 <data name="top_blast_hits" format="tabular" label="${tool.name} on ${on_string}: Top blast hits" from_work_dir="top_blast_hits.tsv"/>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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483 <data name="output" format="tabular" label="${tool.name} on ${on_string}: Output"/>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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484 <data name="plot" format="pdf" label="${tool.name} on ${on_string}: Plot" from_work_dir="genome_structure.pdf"/>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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485 </outputs>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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486
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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487 <tests>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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488 <test>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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489 <param name="assembly" value="test.fa" ftype="fasta" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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490 <param name="species" value="Salmonella_enterica"/>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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491 <output name="output" ftype="tabular" file="output.txt" compare="contains" />
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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492 </test>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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493 </tests>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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494
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
iuc
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495 <help><![CDATA[
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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496 Socru allows you to easily identify and communicate the order and orientation
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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497 of complete genomes around ribosomal operons.
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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498
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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499 These large scale structural variants have real impacts on the phenotype of the organism,
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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500 and with the advent of long read sequencing, we can now start to delve into the mechanisms at work.
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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501
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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502 Documentation can be found at `<https://github.com/quadram-institute-bioscience/socru>`_.
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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503 ]]></help>
ce0c9fe32e04 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/socru commit 6fbcf349a029961f0f45eaf11ade1fbceba42ac1"
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504 <expand macro="citations" />
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505 </tool>