Mercurial > repos > iuc > sonneityping

changeset 1:0ac12c344bfa draft default tip

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planemo upload for repository https://github.com/katholt/sonneityping commit 4d048786a4cf9ecb045fa3263084f98105c15557
author iuc
date Tue, 12 Mar 2024 15:37:17 +0000
parents db4fe7172114
children
files parse_mykrobe_predict.xml
diffstat 1 files changed, 4 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/parse_mykrobe_predict.xml	Thu Sep 16 06:52:18 2021 +0000
+++ b/parse_mykrobe_predict.xml	Tue Mar 12 15:37:17 2024 +0000
@@ -3,6 +3,9 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <xrefs>
+        <xref type="bio.tools">sonneityping</xref>
+    </xrefs>
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
         parse_mykrobe_predict --jsons
@@ -31,7 +34,7 @@
     <tests>
         <test>
             <param name="json" ftype="json" value="SRR6114360.json"/>
-            <param name="optional.alleles" ftype="txt" value="alleles.txt" />
+            <param name="alleles" ftype="txt" value="alleles.txt" />
             <output name="parsed_output">
                 <assert_contents>
                     <has_text text="3.7.30.4" />