# HG changeset patch # User iuc # Date 1643097489 0 # Node ID 1bb12736175c7721c5dc983d5edd996a33a39f12 # Parent 8a9a9350ffaf34e5beb0ef4583e6f40d40a1a560 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 2609367ebbce7e0c3f5b4b2d7c60a82d4bd03246" diff -r 8a9a9350ffaf -r 1bb12736175c write_tsv_script.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/write_tsv_script.py Tue Jan 25 07:58:09 2022 +0000 @@ -0,0 +1,16 @@ +#!/usr/bin/env python + +import re +import sys + +search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*).*\$" + +replace_str = r"\1_\2\t\3\t\4" + +cmd = re.compile(search_str) + +sys.stdout.write("#name\tlength\tcoverage\n") + +for i, line in enumerate(sys.stdin): + if cmd.match(line): + sys.stdout.write(cmd.sub(replace_str, line))