Mercurial > repos > iuc > spades_metaplasmidspades

comparison metaplasmidspades.xml @ 5:21da31ed41a1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit a09a5e3ee3c76550526f082b97de8da75181a1dd
author iuc
date Wed, 13 Jul 2022 07:43:38 +0000
parents 32ab23671cc1
children 4a01e0d2892c
comparison
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4:6b5a5842531e 5:21da31ed41a1
118 <has_text_matching expression=">NODE\_1\_length\_9645\_cov\_.+"/> 118 <has_text_matching expression=">NODE\_1\_length\_9645\_cov\_.+"/>
119 </assert_contents> 119 </assert_contents>
120 </output> 120 </output>
121 <output name="out_cs"> 121 <output name="out_cs">
122 <assert_contents> 122 <assert_contents>
123 <has_n_lines n="1"/> 123 <has_n_lines n="2"/>
124 <has_text_matching expression="#name&#009;length&#009;coverage"/> 124 <has_text_matching expression="#name&#009;length&#009;coverage"/>
125 <has_text_matching expression="NODE_1&#009;9645&#009;13.774865_cutoff_0_type_circular"/>
125 </assert_contents> 126 </assert_contents>
126 </output> 127 </output>
127 <output_collection name="out_cr" type="list" count="3"> 128 <output_collection name="out_cr" type="list" count="3">
128 <element name="pl1.fq.gz.fastq.00.0_0.cor"> 129 <element name="pl1.fq.gz.fastq.00.0_0.cor">
129 <assert_contents> 130 <assert_contents>
147 <has_text_matching expression=">NODE\_1\_length\_9645\_cov\_.+"/> 148 <has_text_matching expression=">NODE\_1\_length\_9645\_cov\_.+"/>
148 </assert_contents> 149 </assert_contents>
149 </output> 150 </output>
150 <output name="out_ss"> 151 <output name="out_ss">
151 <assert_contents> 152 <assert_contents>
152 <has_n_lines n="1"/> 153 <has_n_lines n="2"/>
153 <has_text_matching expression="#name&#009;length&#009;coverage"/> 154 <has_text_matching expression="#name&#009;length&#009;coverage"/>
155 <has_text_matching expression="NODE_1&#009;9645&#009;13.774865_cutoff_0_type_circula"/>
154 </assert_contents> 156 </assert_contents>
155 </output> 157 </output>
156 <output name="out_l"> 158 <output name="out_l">
157 <assert_contents> 159 <assert_contents>
158 <has_text_matching expression="Thank you for using SPAdes!"/> 160 <has_text_matching expression="Thank you for using SPAdes!"/>