Mercurial > repos > iuc > spades_metaplasmidspades

comparison macros.xml @ 10:c8097e741b13 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 099f08cce5c93f4ed22bc8b02296fd4b5d357390
author iuc
date Mon, 03 Mar 2025 11:07:46 +0000
parents 7e27faaad80e
children
comparison
equal deleted inserted replaced
9:7e27faaad80e 10:c8097e741b13
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">3.15.5</token> 2 <token name="@TOOL_VERSION@">3.15.5</token>
3 <token name="@VERSION_SUFFIX@">2</token> 3 <token name="@VERSION_SUFFIX@">3</token>
4 <xml name="requirements"> 4 <xml name="requirements">
5 <requirements> 5 <requirements>
6 <requirement type="package" version="@TOOL_VERSION@">spades</requirement> 6 <requirement type="package" version="@TOOL_VERSION@">spades</requirement>
7 <requirement type="package" version="3.0">zip</requirement> 7 <requirement type="package" version="3.0">zip</requirement>
8 <yield/> 8 <yield/>
383 383
384 <!-- POSTPROCESSING --> 384 <!-- POSTPROCESSING -->
385 385
386 <token name="@STATS@"><![CDATA[ 386 <token name="@STATS@"><![CDATA[
387 #if 'cs' in $optional_output 387 #if 'cs' in $optional_output
388 && test -f 'output/contigs.fasta' && python '$__tool_directory__/write_tsv_script.py' < 'output/contigs.fasta' > '$out_cs' || echo 'No contigs.fasta.' 388 && (test -f 'output/contigs.fasta' && python '$__tool_directory__/write_tsv_script.py' < 'output/contigs.fasta' > '$out_cs' || echo 'No contigs.fasta.')
389 #end if 389 #end if
390 #if 'ss' in $optional_output 390 #if 'ss' in $optional_output
391 && test -f 'output/scaffolds.fasta' && python '$__tool_directory__/write_tsv_script.py' < 'output/scaffolds.fasta' > '$out_ss' || echo 'No scaffolds.fasta.' 391 && (test -f 'output/scaffolds.fasta' && python '$__tool_directory__/write_tsv_script.py' < 'output/scaffolds.fasta' > '$out_ss' || echo 'No scaffolds.fasta.')
392 #end if 392 #end if
393 ]]></token> 393 ]]></token>
394 394
395 <token name="@CORRECTED@"><![CDATA[ 395 <token name="@CORRECTED@"><![CDATA[
396 #if 'corrected' in $optional_output 396 #if 'corrected' in $optional_output
397 && test -d 'output/corrected' && zip -q -r 'corrected.zip' 'output/corrected/*.fastq.gz' || echo 'No output files for corrected reads.' 397 && (test -d 'output/corrected' && zip -q -r 'corrected.zip' 'output/corrected/*.fastq.gz' || echo 'No output files for corrected reads.')
398 #end if 398 #end if
399 ]]></token> 399 ]]></token>
400 400
401 <!-- 401 <!--
402 input 402 input