# HG changeset patch # User iuc # Date 1643097446 0 # Node ID 8d4b90bf9cafc6e5d6325074c18526ecd1ed9461 # Parent 0ec2f2969a3abc384d4cb8329d495b5fdc38d7b6 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 2609367ebbce7e0c3f5b4b2d7c60a82d4bd03246" diff -r 0ec2f2969a3a -r 8d4b90bf9caf write_tsv_script.py --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/write_tsv_script.py Tue Jan 25 07:57:26 2022 +0000 @@ -0,0 +1,16 @@ +#!/usr/bin/env python + +import re +import sys + +search_str = r"^>(NODE|\S+)_(\d+)(?:_|\s)length_(\d+)_cov_(\d+\.*\d*).*\$" + +replace_str = r"\1_\2\t\3\t\4" + +cmd = re.compile(search_str) + +sys.stdout.write("#name\tlength\tcoverage\n") + +for i, line in enumerate(sys.stdin): + if cmd.match(line): + sys.stdout.write(cmd.sub(replace_str, line))