Mercurial > repos > iuc > spades_rnaviralspades
diff rnaviralspades.xml @ 7:d5fb354f745d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/spades commit 69c6e337e239e84ce8fec9cf9fb5d820136877b2
| author | iuc |
|---|---|
| date | Tue, 23 Aug 2022 07:59:16 +0000 |
| parents | 48cf45a53456 |
| children | de1260f8a300 |
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--- a/rnaviralspades.xml Wed Aug 10 13:14:28 2022 +0000 +++ b/rnaviralspades.xml Tue Aug 23 07:59:16 2022 +0000 @@ -21,6 +21,7 @@ @OMP_THREADS@ ## run spades.py --rnaviral + $operation_mode -o 'output' @RESOURCES@ @INPUT_READS_MAIN@ @@ -41,6 +42,7 @@ @CORRECTED@ ]]></command> <inputs> + <expand macro="operation_mode" help="To run read error correction, reads should be in FASTQ format."/> <expand macro="input_files_all" format="fastq,fasta,fastq.gz,fastqsanger.gz,fasta.gz" label="FASTQ RNA-seq file(s)"/> <expand macro="input_additional_files_all" format="fastq,fastq.gz,fastqsanger.gz,fasta,fasta.gz" label="FASTQ RNA-seq file(s)"/> <section name="arf" title="Additional read files"> @@ -144,13 +146,13 @@ <has_n_lines n="0"/> </assert_contents> </output> - <output_collection name="out_cr" type="list" count="4"> - <element name="ecoli_1K_1.fastq.gz.fastq0_0.cor"> + <output_collection name="out_cr" type="list" count="2"> + <element name="ecoli_1K_1.fastq.gz.fastq0_0"> <assert_contents> <has_size value="34468" delta="2000"/> </assert_contents> </element> - <element name="ecoli_1K_2.fastq.gz.fastq0_0.cor"> + <element name="ecoli_1K_2.fastq.gz.fastq0_0"> <assert_contents> <has_size value="34468" delta="2000"/> </assert_contents>