Mercurial > repos > iuc > spaln

comparison test-data/output1_gff_matches.gff3 @ 1:37b5e1f0b544 draft

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"planemo upload for repository https://github.com/ogotoh/spaln commit 4cfc21ef8456ca8b8da0a8a8c045b8a472858608"
author iuc
date Thu, 16 Jul 2020 07:57:10 -0400
parents 95ea8d97abb4
children dd0cd2319ae5
comparison
equal deleted inserted replaced
0:95ea8d97abb4 1:37b5e1f0b544
1 ##gff-version 3 1 ##gff-version 3
2 ##sequence-region scaffold_1 1 59940 2 ##sequence-region scaffold_1 1 59940
3 scaffold_1 ALN nucleotide_to_protein_match 234 264 71 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 1 10 +;Gap=M10 3 scaffold_1 ALN nucleotide_to_protein_match 17 62 79 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 1 14 +;Gap=D1 M14
4 scaffold_1 ALN nucleotide_to_protein_match 305 334 -9 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 11 27 +;Gap=M2 D1 M5 I8 M2 4 scaffold_1 ALN nucleotide_to_protein_match 128 160 -4 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 15 27 +;Gap=M5 I3 M1 D1 M4
5 scaffold_1 ALN nucleotide_to_protein_match 418 542 226 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 28 69 +;Gap=M42 5 scaffold_1 ALN nucleotide_to_protein_match 418 539 210 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 28 68 +;Gap=M41
6 scaffold_1 ALN nucleotide_to_protein_match 2156 2164 37 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 70 72 +;Gap=M3 6 scaffold_1 ALN nucleotide_to_protein_match 7124 7250 187 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 69 110 +;Gap=M42
7 scaffold_1 ALN nucleotide_to_protein_match 2821 2829 32 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 73 75 +;Gap=M3 7 scaffold_1 ALN nucleotide_to_protein_match 7563 7595 11 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 111 121 +;Gap=M11
8 scaffold_1 ALN nucleotide_to_protein_match 7145 7250 176 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 76 110 +;Gap=M35 8 scaffold_1 ALN nucleotide_to_protein_match 7659 7662 21 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 122 123 +;Gap=M2
9 scaffold_1 ALN nucleotide_to_protein_match 7659 7662 22 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 111 112 +;Gap=M2 9 scaffold_1 ALN nucleotide_to_protein_match 7738 7864 21 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 124 165 +;Gap=M14 D1 M7 I2 M19 D1
10 scaffold_1 ALN nucleotide_to_protein_match 7738 7746 4 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 113 114 +;Gap=D1 M2 10 scaffold_1 ALN nucleotide_to_protein_match 7925 7957 26 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 166 176 +;Gap=M11
11 scaffold_1 ALN nucleotide_to_protein_match 7860 7864 24 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 115 115 +;Gap=M1 11 scaffold_1 ALN nucleotide_to_protein_match 8295 8300 29 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 177 178 +;Gap=M2
12 scaffold_1 ALN nucleotide_to_protein_match 8250 8286 15 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 116 125 +;Gap=M10 D3 12 scaffold_1 ALN nucleotide_to_protein_match 8866 8883 31 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 179 184 +;Gap=M6
13 scaffold_1 ALN nucleotide_to_protein_match 8348 8355 28 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 126 127 +;Gap=M2 13 scaffold_1 ALN nucleotide_to_protein_match 8980 8994 30 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 185 189 +;Gap=M5
14 scaffold_1 ALN nucleotide_to_protein_match 8419 8436 26 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 128 133 +;Gap=M6 14 scaffold_1 ALN nucleotide_to_protein_match 9067 9077 27 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 190 193 +;Gap=M4
15 scaffold_1 ALN nucleotide_to_protein_match 8581 8592 29 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 134 137 +;Gap=M4 15 scaffold_1 ALN nucleotide_to_protein_match 9976 9988 28 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 194 197 +;Gap=M4
16 scaffold_1 ALN nucleotide_to_protein_match 8866 8883 29 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 138 143 +;Gap=M6 16 scaffold_1 ALN nucleotide_to_protein_match 10045 10068 27 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 198 205 +;Gap=M8
17 scaffold_1 ALN nucleotide_to_protein_match 8980 8988 28 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 144 146 +;Gap=M3 17 scaffold_1 ALN nucleotide_to_protein_match 10229 10252 38 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 206 213 +;Gap=M8
18 scaffold_1 ALN nucleotide_to_protein_match 9383 9386 33 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 147 148 +;Gap=M2 18 scaffold_1 ALN nucleotide_to_protein_match 10395 10418 23 + . ID=match00001;Name=scaffold_1_5;Target=NP_001121846.1 214 222 +;Gap=M5 I1 M3
19 scaffold_1 ALN nucleotide_to_protein_match 9959 9988 21 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 149 154 +;Gap=D4 M6
20 scaffold_1 ALN nucleotide_to_protein_match 15714 15731 43 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 155 160 +;Gap=M6
21 scaffold_1 ALN nucleotide_to_protein_match 15783 15790 19 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 161 162 +;Gap=M2
22 scaffold_1 ALN nucleotide_to_protein_match 15849 15851 17 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 163 163 +;Gap=M1
23 scaffold_1 ALN nucleotide_to_protein_match 16745 16746 20 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 164 164 +;Gap=M1
24 scaffold_1 ALN nucleotide_to_protein_match 16948 16950 27 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 165 165 +;Gap=M1
25 scaffold_1 ALN nucleotide_to_protein_match 17082 17096 13 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 166 166 +;Gap=M1 D4
26 scaffold_1 ALN nucleotide_to_protein_match 17349 17354 28 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 167 167 +;Gap=D1 M1
27 scaffold_1 ALN nucleotide_to_protein_match 17425 17434 15 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 168 170 +;Gap=M3
28 scaffold_1 ALN nucleotide_to_protein_match 18352 18358 24 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 171 173 +;Gap=M3
29 scaffold_1 ALN nucleotide_to_protein_match 18738 18742 17 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 174 174 +;Gap=M1
30 scaffold_1 ALN nucleotide_to_protein_match 19505 19511 32 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 175 177 +;Gap=M3
31 scaffold_1 ALN nucleotide_to_protein_match 19599 19612 16 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 178 181 +;Gap=M4
32 scaffold_1 ALN nucleotide_to_protein_match 19677 19678 17 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 182 182 +;Gap=M1
33 scaffold_1 ALN nucleotide_to_protein_match 20611 20621 30 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 183 184 +;Gap=M2 D2
34 scaffold_1 ALN nucleotide_to_protein_match 22447 22466 27 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 185 188 +;Gap=D2 M4
35 scaffold_1 ALN nucleotide_to_protein_match 22674 22685 31 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 189 192 +;Gap=M4
36 scaffold_1 ALN nucleotide_to_protein_match 26126 26137 31 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 193 197 +;Gap=I1 M4
37 scaffold_1 ALN nucleotide_to_protein_match 26185 26186 22 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 198 198 +;Gap=M1
38 scaffold_1 ALN nucleotide_to_protein_match 26355 26373 33 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 199 204 +;Gap=M6
39 scaffold_1 ALN nucleotide_to_protein_match 26461 26483 8 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 205 207 +;Gap=M3 D5
40 scaffold_1 ALN nucleotide_to_protein_match 26542 26567 22 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 208 212 +;Gap=D4 M5
41 scaffold_1 ALN nucleotide_to_protein_match 26640 26644 24 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 213 213 +;Gap=M1
42 scaffold_1 ALN nucleotide_to_protein_match 28412 28418 28 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 214 216 +;Gap=M3
43 scaffold_1 ALN nucleotide_to_protein_match 28949 28957 26 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 217 217 +;Gap=M1 D2
44 scaffold_1 ALN nucleotide_to_protein_match 29102 29124 36 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 218 221 +;Gap=D3 M4
45 scaffold_1 ALN nucleotide_to_protein_match 29796 29800 24 + . ID=match00001;Name=scaffold_1_15;Target=NP_001121846.1 222 222 +;Gap=M1 D1