Mercurial > repos > iuc > spaln
diff test-data/output1_gff_genes.gff3 @ 1:37b5e1f0b544 draft
"planemo upload for repository https://github.com/ogotoh/spaln commit 4cfc21ef8456ca8b8da0a8a8c045b8a472858608"
| author | iuc |
|---|---|
| date | Thu, 16 Jul 2020 07:57:10 -0400 |
| parents | 95ea8d97abb4 |
| children | dd0cd2319ae5 |
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--- a/test-data/output1_gff_genes.gff3 Fri Jan 11 18:15:21 2019 -0500 +++ b/test-data/output1_gff_genes.gff3 Thu Jul 16 07:57:10 2020 -0400 @@ -1,47 +1,20 @@ ##gff-version 3 ##sequence-region scaffold_1 1 59940 -scaffold_1 ALN gene 234 29800 1357 + . ID=gene00001;Name=scaffold_1_15 -scaffold_1 ALN mRNA 234 29800 1357 + . ID=mRNA00001;Parent=gene00001;Name=scaffold_1_15 -scaffold_1 ALN cds 234 264 71 + 0 ID=cds00001;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 1 10 + -scaffold_1 ALN cds 305 334 -9 + 2 ID=cds00002;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 11 27 + -scaffold_1 ALN cds 418 542 226 + 2 ID=cds00003;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 28 69 + -scaffold_1 ALN cds 2156 2164 37 + 0 ID=cds00004;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 70 72 + -scaffold_1 ALN cds 2821 2829 32 + 0 ID=cds00005;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 73 75 + -scaffold_1 ALN cds 7145 7250 176 + 0 ID=cds00006;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 76 110 + -scaffold_1 ALN cds 7659 7662 22 + 2 ID=cds00007;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 111 112 + -scaffold_1 ALN cds 7738 7746 4 + 1 ID=cds00008;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 113 114 + -scaffold_1 ALN cds 7860 7864 24 + 1 ID=cds00009;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 115 115 + -scaffold_1 ALN cds 8250 8286 15 + 2 ID=cds00010;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 116 125 + -scaffold_1 ALN cds 8348 8355 28 + 1 ID=cds00011;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 126 127 + -scaffold_1 ALN cds 8419 8436 26 + 2 ID=cds00012;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 128 133 + -scaffold_1 ALN cds 8581 8592 29 + 2 ID=cds00013;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 134 137 + -scaffold_1 ALN cds 8866 8883 29 + 2 ID=cds00014;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 138 143 + -scaffold_1 ALN cds 8980 8988 28 + 2 ID=cds00015;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 144 146 + -scaffold_1 ALN cds 9383 9386 33 + 2 ID=cds00016;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 147 148 + -scaffold_1 ALN cds 9959 9988 21 + 1 ID=cds00017;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 149 154 + -scaffold_1 ALN cds 15714 15731 43 + 1 ID=cds00018;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 155 160 + -scaffold_1 ALN cds 15783 15790 19 + 1 ID=cds00019;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 161 162 + -scaffold_1 ALN cds 15849 15851 17 + 2 ID=cds00020;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 163 163 + -scaffold_1 ALN cds 16745 16746 20 + 2 ID=cds00021;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 164 164 + -scaffold_1 ALN cds 16948 16950 27 + 0 ID=cds00022;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 165 165 + -scaffold_1 ALN cds 17082 17096 13 + 0 ID=cds00023;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 166 166 + -scaffold_1 ALN cds 17349 17354 28 + 0 ID=cds00024;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 167 167 + -scaffold_1 ALN cds 17425 17434 15 + 0 ID=cds00025;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 168 170 + -scaffold_1 ALN cds 18352 18358 24 + 2 ID=cds00026;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 171 173 + -scaffold_1 ALN cds 18738 18742 17 + 1 ID=cds00027;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 174 174 + -scaffold_1 ALN cds 19505 19511 32 + 2 ID=cds00028;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 175 177 + -scaffold_1 ALN cds 19599 19612 16 + 1 ID=cds00029;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 178 181 + -scaffold_1 ALN cds 19677 19678 17 + 2 ID=cds00030;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 182 182 + -scaffold_1 ALN cds 20611 20621 30 + 0 ID=cds00031;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 183 184 + -scaffold_1 ALN cds 22447 22466 27 + 1 ID=cds00032;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 185 188 + -scaffold_1 ALN cds 22674 22685 31 + 2 ID=cds00033;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 189 192 + -scaffold_1 ALN cds 26126 26137 31 + 2 ID=cds00034;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 193 197 + -scaffold_1 ALN cds 26185 26186 22 + 2 ID=cds00035;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 198 198 + -scaffold_1 ALN cds 26355 26373 33 + 0 ID=cds00036;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 199 204 + -scaffold_1 ALN cds 26461 26483 8 + 2 ID=cds00037;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 205 207 + -scaffold_1 ALN cds 26542 26567 22 + 0 ID=cds00038;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 208 212 + -scaffold_1 ALN cds 26640 26644 24 + 1 ID=cds00039;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 213 213 + -scaffold_1 ALN cds 28412 28418 28 + 2 ID=cds00040;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 214 216 + -scaffold_1 ALN cds 28949 28957 26 + 1 ID=cds00041;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 217 217 + -scaffold_1 ALN cds 29102 29124 36 + 1 ID=cds00042;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 218 221 + -scaffold_1 ALN cds 29796 29800 24 + 2 ID=cds00043;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 222 222 + +scaffold_1 ALN gene 17 10418 627 + . ID=gene00001;Name=scaffold_1_5 +scaffold_1 ALN mRNA 17 10418 627 + . ID=mRNA00001;Parent=gene00001;Name=scaffold_1_5 +scaffold_1 ALN cds 17 62 79 + 0 ID=cds00001;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 1 14 + +scaffold_1 ALN cds 128 160 -4 + 2 ID=cds00002;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 15 27 + +scaffold_1 ALN cds 418 539 210 + 2 ID=cds00003;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 28 68 + +scaffold_1 ALN cds 7124 7250 187 + 0 ID=cds00004;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 69 110 + +scaffold_1 ALN cds 7563 7595 11 + 2 ID=cds00005;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 111 121 + +scaffold_1 ALN cds 7659 7662 21 + 2 ID=cds00006;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 122 123 + +scaffold_1 ALN cds 7738 7864 21 + 1 ID=cds00007;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 124 165 + +scaffold_1 ALN cds 7925 7957 26 + 0 ID=cds00008;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 166 176 + +scaffold_1 ALN cds 8295 8300 29 + 0 ID=cds00009;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 177 178 + +scaffold_1 ALN cds 8866 8883 31 + 0 ID=cds00010;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 179 184 + +scaffold_1 ALN cds 8980 8994 30 + 0 ID=cds00011;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 185 189 + +scaffold_1 ALN cds 9067 9077 27 + 0 ID=cds00012;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 190 193 + +scaffold_1 ALN cds 9976 9988 28 + 1 ID=cds00013;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 194 197 + +scaffold_1 ALN cds 10045 10068 27 + 0 ID=cds00014;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 198 205 + +scaffold_1 ALN cds 10229 10252 38 + 0 ID=cds00015;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 206 213 + +scaffold_1 ALN cds 10395 10418 23 + 0 ID=cds00016;Parent=mRNA00001;Name=scaffold_1_5;Target=NP_001121846.1 214 222 +