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diff test-data/output1_gff_genes.gff3 @ 0:95ea8d97abb4 draft

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planemo upload for repository https://github.com/ogotoh/spaln commit af52c6b4c904f6291953881111d415d5b86ee4d6
author iuc
date Fri, 11 Jan 2019 18:15:21 -0500
parents
children 37b5e1f0b544
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/output1_gff_genes.gff3	Fri Jan 11 18:15:21 2019 -0500
@@ -0,0 +1,47 @@
+##gff-version	3
+##sequence-region	scaffold_1 1 59940
+scaffold_1	ALN	gene	234	29800	1357	+	.	ID=gene00001;Name=scaffold_1_15
+scaffold_1	ALN	mRNA	234	29800	1357	+	.	ID=mRNA00001;Parent=gene00001;Name=scaffold_1_15
+scaffold_1	ALN	cds	234	264	71	+	0	ID=cds00001;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 1 10 +
+scaffold_1	ALN	cds	305	334	-9	+	2	ID=cds00002;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 11 27 +
+scaffold_1	ALN	cds	418	542	226	+	2	ID=cds00003;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 28 69 +
+scaffold_1	ALN	cds	2156	2164	37	+	0	ID=cds00004;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 70 72 +
+scaffold_1	ALN	cds	2821	2829	32	+	0	ID=cds00005;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 73 75 +
+scaffold_1	ALN	cds	7145	7250	176	+	0	ID=cds00006;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 76 110 +
+scaffold_1	ALN	cds	7659	7662	22	+	2	ID=cds00007;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 111 112 +
+scaffold_1	ALN	cds	7738	7746	4	+	1	ID=cds00008;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 113 114 +
+scaffold_1	ALN	cds	7860	7864	24	+	1	ID=cds00009;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 115 115 +
+scaffold_1	ALN	cds	8250	8286	15	+	2	ID=cds00010;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 116 125 +
+scaffold_1	ALN	cds	8348	8355	28	+	1	ID=cds00011;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 126 127 +
+scaffold_1	ALN	cds	8419	8436	26	+	2	ID=cds00012;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 128 133 +
+scaffold_1	ALN	cds	8581	8592	29	+	2	ID=cds00013;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 134 137 +
+scaffold_1	ALN	cds	8866	8883	29	+	2	ID=cds00014;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 138 143 +
+scaffold_1	ALN	cds	8980	8988	28	+	2	ID=cds00015;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 144 146 +
+scaffold_1	ALN	cds	9383	9386	33	+	2	ID=cds00016;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 147 148 +
+scaffold_1	ALN	cds	9959	9988	21	+	1	ID=cds00017;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 149 154 +
+scaffold_1	ALN	cds	15714	15731	43	+	1	ID=cds00018;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 155 160 +
+scaffold_1	ALN	cds	15783	15790	19	+	1	ID=cds00019;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 161 162 +
+scaffold_1	ALN	cds	15849	15851	17	+	2	ID=cds00020;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 163 163 +
+scaffold_1	ALN	cds	16745	16746	20	+	2	ID=cds00021;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 164 164 +
+scaffold_1	ALN	cds	16948	16950	27	+	0	ID=cds00022;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 165 165 +
+scaffold_1	ALN	cds	17082	17096	13	+	0	ID=cds00023;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 166 166 +
+scaffold_1	ALN	cds	17349	17354	28	+	0	ID=cds00024;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 167 167 +
+scaffold_1	ALN	cds	17425	17434	15	+	0	ID=cds00025;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 168 170 +
+scaffold_1	ALN	cds	18352	18358	24	+	2	ID=cds00026;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 171 173 +
+scaffold_1	ALN	cds	18738	18742	17	+	1	ID=cds00027;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 174 174 +
+scaffold_1	ALN	cds	19505	19511	32	+	2	ID=cds00028;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 175 177 +
+scaffold_1	ALN	cds	19599	19612	16	+	1	ID=cds00029;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 178 181 +
+scaffold_1	ALN	cds	19677	19678	17	+	2	ID=cds00030;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 182 182 +
+scaffold_1	ALN	cds	20611	20621	30	+	0	ID=cds00031;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 183 184 +
+scaffold_1	ALN	cds	22447	22466	27	+	1	ID=cds00032;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 185 188 +
+scaffold_1	ALN	cds	22674	22685	31	+	2	ID=cds00033;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 189 192 +
+scaffold_1	ALN	cds	26126	26137	31	+	2	ID=cds00034;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 193 197 +
+scaffold_1	ALN	cds	26185	26186	22	+	2	ID=cds00035;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 198 198 +
+scaffold_1	ALN	cds	26355	26373	33	+	0	ID=cds00036;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 199 204 +
+scaffold_1	ALN	cds	26461	26483	8	+	2	ID=cds00037;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 205 207 +
+scaffold_1	ALN	cds	26542	26567	22	+	0	ID=cds00038;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 208 212 +
+scaffold_1	ALN	cds	26640	26644	24	+	1	ID=cds00039;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 213 213 +
+scaffold_1	ALN	cds	28412	28418	28	+	2	ID=cds00040;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 214 216 +
+scaffold_1	ALN	cds	28949	28957	26	+	1	ID=cds00041;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 217 217 +
+scaffold_1	ALN	cds	29102	29124	36	+	1	ID=cds00042;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 218 221 +
+scaffold_1	ALN	cds	29796	29800	24	+	2	ID=cds00043;Parent=mRNA00001;Name=scaffold_1_15;Target=NP_001121846.1 222 222 +