Mercurial > repos > iuc > split_libraries_fastq
diff test-data/split_libraries/split_library_log @ 0:6f55444df744 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
| author | iuc |
|---|---|
| date | Thu, 18 May 2017 09:37:08 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/split_libraries/split_library_log Thu May 18 09:37:08 2017 -0400 @@ -0,0 +1,36 @@ +Number raw input seqs 8 + +Length outside bounds of 200 and 1000 0 +Num ambiguous bases exceeds limit of 6 0 +Missing Qual Score 0 +Mean qual score below minimum of 25 0 +Max homopolymer run exceeds limit of 6 0 +Num mismatches in primer exceeds limit of 0: 0 + +Sequence length details for all sequences passing quality filters: +Raw len min/max/avg 244.0/276.0/255.5 +Wrote len min/max/avg 211.0/243.0/222.5 + +Barcodes corrected/not 0/0 +Uncorrected barcodes will not be written to the output fasta file. +Corrected barcodes will be written with the appropriate barcode category. +Corrected but unassigned sequences will not be written unless --retain_unassigned_reads is enabled. + +Total valid barcodes that are not in mapping file 0 +Sequences associated with valid barcodes that are not in the mapping file will not be written. + +Barcodes in mapping file +Num Samples 3 +Sample ct min/max/mean: 2 / 4 / 2.67 +Sample Sequence Count Barcode +PC.634 4 ACAGAGTCGGCT +PC.354 2 AGCACGAGCCTA +PC.481 2 ACCAGCGACTAG +PC.593 0 AGCAGCACTTGT +PC.636 0 ACGGTGAGTGTC +PC.635 0 ACCGCAGAGTCA +PC.356 0 ACAGACCACTCA +PC.607 0 AACTGTGCGTAC +PC.355 0 AACTCGTCGATG + +Total number seqs written 8 \ No newline at end of file