Mercurial > repos > iuc > spotyping
diff spotyping.xml @ 2:efa2be6db310 draft default tip
planemo upload for repository https://github.com/xiaeryu/SpoTyping-v2.0/tree/master/SpoTyping-v2.0-commandLine commit 059ddaa55a5e4bdac5aaba74fe489e9268731390
author | iuc |
---|---|
date | Sun, 21 Oct 2018 13:03:00 -0400 |
parents | f82981245fbe |
children |
line wrap: on
line diff
--- a/spotyping.xml Sat Oct 06 18:48:35 2018 -0400 +++ b/spotyping.xml Sun Oct 21 13:03:00 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="spotyping" name="SpoTyping" version="@TOOL_VERSION@+galaxy1" profile="17.01"> +<tool id="spotyping" name="SpoTyping" version="@TOOL_VERSION@+galaxy2" profile="17.01"> <description>fast and accurate in silico Mycobacterium spoligotyping from sequence reads</description> <macros> @@ -9,7 +9,7 @@ <requirement type="package" version="@TOOL_VERSION@">spotyping</requirement> </requirements> - <command detect_errors="exit_code"><![CDATA[ + <command detect_errors="aggressive"><![CDATA[ #set $input_file='input.' + $input.extension ln -s '${input}' $input_file && SpoTyping.py @@ -60,6 +60,13 @@ </assert_contents> </output> </test> + <test expect_failure="true"> + <param name="input" value="input.fastq.gz" ftype="fastq.gz" /> + <param name="seq" value="--seq" /> + <assert_stderr> + <has_text text="BLAST options error" /> + </assert_stderr> + </test> <test expect_num_outputs="2"> <param name="input" value="input.fastq.gz" ftype="fastq.gz" /> <param name="noQuery" value="" />