Mercurial > repos > iuc > spyboat

comparison spyboat.xml @ 5:07a85bc414ba draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 8436aab757c3f41423f3ba76961c2f599f97fc40
author iuc
date Wed, 10 May 2023 18:52:04 +0000
parents 8815bc7e9cef
children 117a042eb1b8
comparison
equal deleted inserted replaced
4:8815bc7e9cef 5:07a85bc414ba
1 <tool id="spyboat" name="SpyBOAT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT"> 1 <tool id="spyboat" name="SpyBOAT" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="MIT">
2 <description>wavelet analyzes image stacks</description> 2 <description>wavelet analyzes image stacks</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">0.1.1</token> 4 <token name="@TOOL_VERSION@">0.1.2</token>
5 <token name="@VERSION_SUFFIX@">1</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 </macros> 6 </macros>
7 <requirements> 7 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">spyboat</requirement> 8 <requirement type="package" version="@TOOL_VERSION@">spyboat</requirement>
9 </requirements> 9 </requirements>
204 To limit the number of Wavelet transformations (computing time), downscaling of the input movie resolution is recommended. 204 To limit the number of Wavelet transformations (computing time), downscaling of the input movie resolution is recommended.
205 Trimming away parts of the movie with no relevant data (e.g. outer dark edges) also speeds up the processing. 205 Trimming away parts of the movie with no relevant data (e.g. outer dark edges) also speeds up the processing.
206 206
207 If multiple channels are present in your data, extract the channel of interest beforehand (e.g. with Fiji). 207 If multiple channels are present in your data, extract the channel of interest beforehand (e.g. with Fiji).
208 208
209 **Author**: Gregor Mönke (gregor.moenke@embl.de). 209 **Author**: Gregor Mönke (github.com/tensionhead).
210
211 **SpyBOAT repository**: https://github.com/tensionhead/SpyBOAT
210 212
211 **Wrapper by**: Jelle Scholtalbers (jelle.scholtalbers@embl.de). 213 **Wrapper by**: Jelle Scholtalbers (jelle.scholtalbers@embl.de).
212 214
213 **Know what you are doing** 215 **Know what you are doing**
214 216
234 236
235 - Smallest Period: 237 - Smallest Period:
236 The minimal period to scan for, this is the higher (in frequency) end of the spectrum. A warning will be given during processing if the chosen value deceeds the Nyquist limit (2 times the sampling interval). 238 The minimal period to scan for, this is the higher (in frequency) end of the spectrum. A warning will be given during processing if the chosen value deceeds the Nyquist limit (2 times the sampling interval).
237 239
238 - Largest period: 240 - Largest period:
239 The maximal period to scan for, this is the lower (in frequency) end of the spectrum. The inbuild Sinc filter will remove any periods larger than this form the data. Due to the 'roll off' of the filter, this value should be chosen generously. A warning will be given during processing if the chosen value exceeds the length of the time series. 241 The maximal period to scan for, this is the lower (in frequency) end of the spectrum. A warning will be given during processing if the chosen value exceeds the length of the time series.
240 242
241 - Number of periods to scan for: 243 - Number of periods to scan for:
242 This is the the number of convolutions computed per pixel. 244 This is the the number of convolutions computed per pixel.
243 245
244 Spectral resolution = ( biggest period - smallest period ) / number of periods 246 Spectral resolution = ( biggest period - smallest period ) / number of periods