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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/spyboat commit 169dbae234162ed1e7167e62a3e54de8f89b0268
author iuc
date Thu, 23 Jun 2022 17:28:14 +0000
parents 76733d05d8ef
children
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#!/usr/bin/env bash


INPUT_PATH='./test-data/test-movie.tif'
SCRIPT_PATH='.'

# set to galaxy defaults!!
python3 $SCRIPT_PATH/spyboat_cli.py --input_path $INPUT_PATH --phase_out phase_out.tif --period_out period_out.tif --dt 1 --Tmin 20 --Tmax 30 --nT 150 --ncpu 6 --Tcutoff 40

# additional paramters
#--masking static --mask_frame 10 --mask_thresh 300 --rescale 80 --gauss_sigma 1

printf "\n"
# printf "\nError examples:\n"