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comparison fastq_dump.xml @ 8:1920e0508831 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 39ca11da7daeb3fa030fcb28e8987f8d7f24aec3
author iuc
date Mon, 03 Jul 2017 06:30:15 -0400
parents c7620aa7e1f0
children 6c60903f70ac
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7:c7620aa7e1f0 8:1920e0508831
1 <tool id="fastq_dump" name="Extract reads in Fastq/a" version="@VERSION@.2"> 1 <tool id="fastq_dump" name="Extract reads in Fastq/a" version="@VERSION@.3">
2 <description>format from NCBI SRA</description> 2 <description>format from NCBI SRA</description>
3 <macros> 3 <macros>
4 <import>sra_macros.xml</import> 4 <import>sra_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
47 #end if 47 #end if
48 fastq-dump --accession "\$acc" 48 fastq-dump --accession "\$acc"
49 --split-files 49 --split-files
50 #end if 50 #end if
51 --defline-seq '@\$sn[_\$rn]/\$ri' 51 --defline-seq '@\$sn[_\$rn]/\$ri'
52 --defline-qual '+'
52 53
53 $adv.split 54 $adv.split
54 #if str( $adv.alignments ) == "aligned": 55 #if str( $adv.alignments ) == "aligned":
55 --aligned 56 --aligned
56 #end if 57 #end if