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comparison fastq_dump.xml @ 4:62e4d56ebb6f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 4091428e9e28ca06263bc00cdf938d20f620aa4d
author iuc
date Fri, 21 Oct 2016 04:32:19 -0400
parents 4732693f4661
children 30775c836c77
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3:4732693f4661 4:62e4d56ebb6f
2 <description>in FASTQ/A format from NCBI SRA.</description> 2 <description>in FASTQ/A format from NCBI SRA.</description>
3 <macros> 3 <macros>
4 <import>sra_macros.xml</import> 4 <import>sra_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
7 <stdio>
8 <exit_code range="127" level="fatal" description="Could not locate fastq-dump binary"/>
9 </stdio>
10 <version_command>fastq-dump --version</version_command> 7 <version_command>fastq-dump --version</version_command>
11 <command> 8 <command detect_errors="exit_code">
12 <![CDATA[ 9 <![CDATA[
13 10
14 #if $input.input_select=="file_list": 11 #if $input.input_select=="file_list":
15 for acc in `cat $input.file_list` ; 12 for acc in `cat $input.file_list` ;
16 do 13 do