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comparison fasterq_dump.xml @ 31:734abc7ac21d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 3a7f854e8ebfb2bed11198fb83181f305af633f7
author iuc
date Thu, 14 Sep 2023 07:38:02 +0000
parents 4317d3cb6cba
children 1ec814014652
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30:4317d3cb6cba 31:734abc7ac21d
185 <element name="forward" file="SRR11953971_1.fastq.gz" ftype="fastqsanger.gz" decompress="True"/> 185 <element name="forward" file="SRR11953971_1.fastq.gz" ftype="fastqsanger.gz" decompress="True"/>
186 <element name="reverse" file="SRR11953971_2.fastq.gz" ftype="fastqsanger.gz" decompress="True"/> 186 <element name="reverse" file="SRR11953971_2.fastq.gz" ftype="fastqsanger.gz" decompress="True"/>
187 </element> 187 </element>
188 </output_collection> 188 </output_collection>
189 </test> 189 </test>
190 <test expect_num_outputs="4">
191 <param name="input_select" value="file_list"/>
192 <param name="file_list" value="sra_manifest.tabular" ftype="sra_manifest.tabular"/>
193 <section name="adv">
194 <param name="seq_defline" value="@$ac.$si/$ri $sn length=$rl"/>
195 </section>
196 <output_collection name="list_paired" type="list:paired" count="1">
197 <element name="SRR11953971">
198 <element name="forward" ftype="fastqsanger.gz" decompress="True">
199 <assert_contents>
200 <!-- TODO replace has_size by has_line -->
201 <has_size min="56206"/>
202 <!-- <has_line line="@SRR11953971.2053/1 2053 length=101"/> -->
203 </assert_contents>
204 </element>
205 <element name="reverse" ftype="fastqsanger.gz" decompress="True">
206 <assert_contents>
207 <has_size min="59843"/>
208 <!-- <has_line line="@SRR11953971.2053/2 2053 length=101"/> -->
209 </assert_contents>
210 </element>
211 </element>
212 </output_collection>
213 </test>
190 </tests> 214 </tests>
191 <help><![CDATA[ 215 <help><![CDATA[
192 **What it does?** 216 **What it does?**
193 217
194 This tool extracts data (in fastq_ format) from the Short Read Archive (SRA) at the National Center for Biotechnology Information (NCBI). It is based on the fasterq-dump_ utility of the SRA Toolkit. The following applies: 218 This tool extracts data (in fastq_ format) from the Short Read Archive (SRA) at the National Center for Biotechnology Information (NCBI). It is based on the fasterq-dump_ utility of the SRA Toolkit. The following applies: