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comparison sra_macros.xml @ 16:aad3885b3216 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 2be63abd7e4db27fa32ecbbc10d48cacb0073115"
author iuc
date Fri, 20 Mar 2020 12:47:18 -0400
parents f5ea3ce9b9b0
children c441583adae5
comparison
equal deleted inserted replaced
15:f5ea3ce9b9b0 16:aad3885b3216
1 <macros> 1 <macros>
2 <token name="@VERSION@">2.10</token> 2 <token name="@VERSION@">2.10.4</token>
3 <token name="@ACCESSIONS_FROM_FILE@"> 3 <token name="@ACCESSIONS_FROM_FILE@">
4 grep '^[[:space:]]*[E|S|D]RR[0-9]\{1,\}[[:space:]]*$' 4 grep '^[[:space:]]*[E|S|D]RR[0-9]\{1,\}[[:space:]]*$'
5 </token> 5 </token>
6 <token name="@CONFIGURE_TIMEOUT@"><![CDATA[
7 vdb-config --restore-defaults && vdb-config -s /http/timeout/read=10000 || true &&
8 ]]></token>
6 <token name="@SET_ACCESSIONS@"><![CDATA[ 9 <token name="@SET_ACCESSIONS@"><![CDATA[
7 #if $input.input_select=="file_list": 10 #if $input.input_select=="file_list":
8 for acc in `@ACCESSIONS_FROM_FILE@ '$input.file_list'` ; 11 for acc in `@ACCESSIONS_FROM_FILE@ '$input.file_list'` ;
9 do ( 12 do (
10 #elif $input.input_select=="accession_number": 13 #elif $input.input_select=="accession_number":
12 #end if 15 #end if
13 ]]></token> 16 ]]></token>
14 17
15 <macro name="requirements"> 18 <macro name="requirements">
16 <requirements> 19 <requirements>
17 <requirement type="package" version="2.10">sra-tools</requirement> 20 <requirement type="package" version="2.10.3">sra-tools</requirement>
18 <requirement type="package" version="1.9">samtools</requirement> 21 <yield/>
19 </requirements> 22 </requirements>
20 </macro> 23 </macro>
21 <macro name="sanitize_query"> 24 <macro name="sanitize_query">
22 <sanitizer> 25 <sanitizer>
23 <valid initial="string.printable"> 26 <valid initial="string.printable">