Mercurial > repos > iuc > sra_tools
comparison fasterq_dump.xml @ 40:8848455c0270 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 7632986831e24fcd189a57d824b9e6b1d5dc5c4c
| author | iuc |
|---|---|
| date | Mon, 26 Aug 2024 14:59:28 +0000 |
| parents | f8054ea1c365 |
| children |
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| 39:516a54ddf218 | 40:8848455c0270 |
|---|---|
| 71 </command> | 71 </command> |
| 72 <expand macro="configfile_hack"/> | 72 <expand macro="configfile_hack"/> |
| 73 <inputs> | 73 <inputs> |
| 74 <expand macro="input_conditional"/> | 74 <expand macro="input_conditional"/> |
| 75 <section name="adv" title="Advanced Options" expanded="False"> | 75 <section name="adv" title="Advanced Options" expanded="False"> |
| 76 <expand macro="defline" defline_param="--seq-defline" defline_default="@$sn/$ri"/> | 76 <expand macro="defline" defline_param="--seq-defline" defline_default="@$ac.$sn/$ri"/> |
| 77 <param name="minlen" type="integer" label="Minimum read length" optional="true" help="Filter by sequence length. Will dump only reads longer or equal to this value." argument="--min-read-len"/> | 77 <param name="minlen" type="integer" label="Minimum read length" optional="true" help="Filter by sequence length. Will dump only reads longer or equal to this value." argument="--min-read-len"/> |
| 78 <param name="split" type="select" display="radio" label="Select how to split the spots" help="This option will only be used when there are multiple reads per spot (for example paired-end)."> | 78 <param name="split" type="select" display="radio" label="Select how to split the spots" help="This option will only be used when there are multiple reads per spot (for example paired-end)."> |
| 79 <option value="--split-3">--split-3: write properly paired biological reads into different files and single reads in another file</option> | 79 <option value="--split-3">--split-3: write properly paired biological reads into different files and single reads in another file</option> |
| 80 <option value="--split-files">--split-files: write reads into different files (forward and reverse may not match if one read is empty)</option> | 80 <option value="--split-files">--split-files: write reads into different files (forward and reverse may not match if one read is empty)</option> |
| 81 <option value="--split-spot">--split-spot: split spots into reads (only one output file)</option> | 81 <option value="--split-spot">--split-spot: split spots into reads (only one output file)</option> |