Mercurial > repos > iuc > sra_tools
diff sra_macros.xml @ 1:462ee06c9358 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 4defaa3ff1c21e2ec39033bfe63ee69471104ede
author | iuc |
---|---|
date | Tue, 17 May 2016 14:14:50 -0400 |
parents | b723c120161a |
children | f256cb398262 |
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--- a/sra_macros.xml Sun Dec 06 09:04:37 2015 -0500 +++ b/sra_macros.xml Tue May 17 14:14:50 2016 -0400 @@ -1,9 +1,10 @@ <macros> <macro name="requirements"> <requirements> - <requirement type="package" version="1.1.3">ngs_sdk</requirement> - <requirement type="package" version="2.5.2">ncbi_vdb</requirement> - <requirement type="package" version="2.5.2">sra_toolkit</requirement> + <requirement type="package" version="1.2.3">ngs_sdk</requirement> + <requirement type="package" version="2.6.2">ncbi_vdb</requirement> + <requirement type="package" version="2.6.2">sra_toolkit</requirement> + <requirement type="package" version="2.6.2">sra-tools</requirement> <requirement type="package" version="5.18.1">perl</requirement> </requirements> </macro> @@ -12,13 +13,17 @@ <param name="input_select" type="select" label="select input type"> <option value="accession_number">SRR accession</option> <option value="file">SRA archive in current history</option> + <option value="file_list">List of SRA accession, one per line</option> </param> <when value="accession_number"> - <param name="accession" type="text" label="SRR accession" help="Must start with SRR, e.g. SRR925743"/> + <param name="accession" type="text" label="SRR accession" help="Must start with SRR,DRR or ERR, e.g. SRR925743 , ERR343809"/> </when> <when value="file"> <param format="sra" name="file" type="data" label="sra archive"/> </when> + <when value="file_list"> + <param format="txt" name="file_list" type="data" label="sra accession list"/> + </when> </conditional> </macro> <macro name="alignments"> @@ -45,8 +50,16 @@ <citation type="doi">10.1093/nar/gkq1019</citation> </citations> </macro> - <token name="@SRATOOLS_ATTRRIBUTION@">Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. + <token name="@SRATOOLS_ATTRRIBUTION@"> + Browse the NCBI SRA for SRR accessions at http://www.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=studies. + Galaxy tool wrapper originally written by Matt Shirley (mdshw5 at gmail.com). + + Wrapper modified by Philip Mabon ( philip.mabon at phac-aspc.gc.ca ). + Tool dependencies, clean-up and bug-fixes by Marius van den Beek (m.vandenbeek at gmail.com). - For support and bug reports contact Matt Shirley or Marius van den Beek or go to https://github.com/galaxyproject/tools-iuc.</token> + + For support and bug reports contact Matt Shirley or Marius van den Beek or go to https://github.com/galaxyproject/tools-iuc. + + </token> </macros>