Mercurial > repos > iuc > sra_tools

diff sam_dump.xml @ 13:c38286ea7047 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 686710a7d313b828f1daed20c4055479727f2d91
author iuc
date Wed, 17 Oct 2018 11:44:12 -0400
parents 8c00bc7fd8de
children 1790dcf3c32d
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line diff
--- a/sam_dump.xml	Wed Sep 26 05:33:56 2018 -0400
+++ b/sam_dump.xml	Wed Oct 17 11:44:12 2018 -0400
@@ -7,16 +7,7 @@
     <version_command>sam-dump --version</version_command>
     <command detect_errors="exit_code">
 <![CDATA[
-    #if $input.input_select=="file_list":
-      for acc in `cat $input.file_list` ;
-      do
-    #elif $input.input_select=="accession_number":
-      acc="${input.accession}" &&
-    #end if
-
-    #if $input.input_select=="file_list" or $input.input_select=="accession_number":
-          [ ""\$acc" =~ ^[E|S|D]RR[0-9]{1,}$" ] && (
-    #end if
+        @SET_ACCESSIONS@
 
         ## Need to set the home directory to the current working directory,
         ## else the tool tries to write to home/.ncbi and fails when used