# HG changeset patch
# User iuc
# Date 1710429719 0
# Node ID 1ec814014652c7182fd11d223957940e848dfe17
# Parent  de0f7e0a3896c7852ed7fe25a0544b419eeb3045
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit cb858cbf5d9e307b663105f674f1acaa4f90a1fb

diff -r de0f7e0a3896 -r 1ec814014652 fasterq_dump.xml
--- a/fasterq_dump.xml	Thu Mar 07 07:22:00 2024 +0000
+++ b/fasterq_dump.xml	Thu Mar 14 15:21:59 2024 +0000
@@ -2,6 +2,7 @@
     <description>format from NCBI SRA</description>
     <macros>
         <import>macros.xml</import>
+        <token name="VERSION_SUFFIX">1</token>
     </macros>
     <expand macro="edam_ontology"/>
     <expand macro="bio_tools"/>
@@ -13,7 +14,9 @@
     @CONFIGURE_RETRY@
     @SET_ACCESSIONS@
     while [ \$SRA_PREFETCH_ATTEMPT -le \$SRA_PREFETCH_RETRIES ] ; do
-        fasterq-dump "\$acc" -e \${GALAXY_SLOTS:-1}
+        fasterq-dump "\$acc"
+        -e \${GALAXY_SLOTS:-1}
+        -t \${TMPDIR}
         --seq-defline '$adv.seq_defline'
         --qual-defline '+'
         $adv.split