# HG changeset patch # User iuc # Date 1724684368 0 # Node ID 8848455c027034cf19ba64027a478a066ffc4a3d # Parent 516a54ddf218cf10b70f17747937854e1c730e91 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sra-tools commit 7632986831e24fcd189a57d824b9e6b1d5dc5c4c diff -r 516a54ddf218 -r 8848455c0270 fasterq_dump.xml --- a/fasterq_dump.xml Mon Jun 03 15:07:36 2024 +0000 +++ b/fasterq_dump.xml Mon Aug 26 14:59:28 2024 +0000 @@ -73,7 +73,7 @@
- + diff -r 516a54ddf218 -r 8848455c0270 fastq_dump.xml --- a/fastq_dump.xml Mon Jun 03 15:07:36 2024 +0000 +++ b/fastq_dump.xml Mon Aug 26 14:59:28 2024 +0000 @@ -91,7 +91,7 @@
- + @@ -279,8 +279,8 @@
- - + + diff -r 516a54ddf218 -r 8848455c0270 macros.xml --- a/macros.xml Mon Jun 03 15:07:36 2024 +0000 +++ b/macros.xml Mon Aug 26 14:59:28 2024 +0000 @@ -1,6 +1,6 @@ 3.1.1 - 0 + 1 22.01 diff -r 516a54ddf218 -r 8848455c0270 test-data/DRR015708_forward.fastqsanger --- a/test-data/DRR015708_forward.fastqsanger Mon Jun 03 15:07:36 2024 +0000 +++ b/test-data/DRR015708_forward.fastqsanger Mon Aug 26 14:59:28 2024 +0000 @@ -1,20 +1,20 @@ -@HWI-ST895_0148_AC1GFWACXX:5:1101:1258:1938/1 +@DRR015708.HWI-ST895_0148_AC1GFWACXX:5:1101:1258:1938/1 NTATTGTAGCGCACTATGAGGTCGCTCATTANTNTACATCNNCATCCAAATTTCAGCATNANTTTNNNNNTGTTTGATATTCTCAAAGNGATNAACGTTT + #1=DDFFFHGHHHJIIIIGIJFHIJJJJJJI#0#08DFII##-7@FHIIJJJJGEHEEE#,#,,;#####,,;?DCCDEFEEFCDDDD#+2+#+2C -@HWI-ST895_0148_AC1GFWACXX:5:1101:2399:1887/1 +@DRR015708.HWI-ST895_0148_AC1GFWACXX:5:1101:2399:1887/1 NTAAAGGTTATTGTGCTTCACAGAAAATGCATTATTATGGGTATAAACTTCATGCGGTTTGCTCAGCGGAAGGTGTCTTTCAAAGTTTGGATATTAGTCC + #1=DDFFEHHHHHGIJJJJGIJJJJJJJJJJJJIJJJJJJJCFGFIIHJIJHIJJJJHIJJJJIJIJIFHBDE;@ACEEEDDCCCCCDDDCCDCCFECCC diff -r 516a54ddf218 -r 8848455c0270 test-data/DRR015708_reverse.fastqsanger --- a/test-data/DRR015708_reverse.fastqsanger Mon Jun 03 15:07:36 2024 +0000 +++ b/test-data/DRR015708_reverse.fastqsanger Mon Aug 26 14:59:28 2024 +0000 @@ -1,20 +1,20 @@ -@HWI-ST895_0148_AC1GFWACXX:5:1101:1258:1938/2 +@DRR015708.HWI-ST895_0148_AC1GFWACXX:5:1101:1258:1938/2 CATTANNAGNNANNNTTNNNNGANNNNNTCGANNNNNANTTTTAANCGNNNNNCTCTTNGAGAATATCAAANAGNTNAAAAATTANGCTGANNNTNGNAT + CCCFF##4<##2###32####22#####11?F#####0#07CHGI#.;#####--;BB#,;?ADDDEEDDD#,8#,#,58C@C>CEC;A538: -@HWI-ST895_0148_AC1GFWACXX:5:1101:2003:1864/2 +@DRR015708.HWI-ST895_0148_AC1GFWACXX:5:1101:2003:1864/2 ATTGAAACCTTTTGAGTTGATTCGTGGATTTTTGATAAATGCATAATATCCTCTAAAAATTAAGGCATAAGCATCTAACAAAAAAAGTCTTTTATCTAAT + CCCFFFFFHHHHHJEGGHIHIIJJHHJHIJIJJJGJIJJJJJJJJJJJJJIIIJIJJIJIJJIJJJJIGHEHIIHHHHFHFFEDDDDCDEEDDDDDDEDD -@HWI-ST895_0148_AC1GFWACXX:5:1101:2399:1887/2 +@DRR015708.HWI-ST895_0148_AC1GFWACXX:5:1101:2399:1887/2 TTGGTATTCTGCGGATAAATATCCTTTATCAGCTAAGAGCGTACAATTTTTAAACTGCTGTTTTATATCTTTCAGATAATGAATGTCATGCACTGAAGCT + BCCFBDFFHHHHHJJJJJJJJJJJJJJJJJJJJJIJIFIJJHHIIIJJJJGHJJJJJJJJHIIJJIJJHHHHHHGEFFFFFFCDCEEEFDDDDCDD>CDD diff -r 516a54ddf218 -r 8848455c0270 test-data/ERR027433_forward.fastqsanger --- a/test-data/ERR027433_forward.fastqsanger Mon Jun 03 15:07:36 2024 +0000 +++ b/test-data/ERR027433_forward.fastqsanger Mon Aug 26 14:59:28 2024 +0000 @@ -1,20 +1,20 @@ -@IL4_4847:5:1:1051:7109/1 +@ERR027433.IL4_4847:5:1:1051:7109/1 GCCGCCAACGTCCGACGGCGCGTCCCGCACGACTTGAACCGATCTCACCGAGACAGAACTAT + C@CC@@@C2BBCBB:>@8@@5@>>@@@@@>@97@@==<@>>@4<'@8>:35=%&B####### -@IL4_4847:5:1:1058:16093/1 +@ERR027433.IL4_4847:5:1:1058:16093/1 AAGGTCGGGCATTCGTTCGAGCCGACGACCGCGAGGAAGCGGTTCGGCCGGGCGTAGAATCC + ?ABBABB;<@>@=BCBB,,?):7@/3$54'818->1-+=+()$6--C8+?1 -@IL4_4847:5:1:1111:15034/1 +@ERR027433.IL4_4847:5:1:1111:15034/1 TCGATCCGCAGGGCAATCTGTGGATCCCGGCGTTCGACGACGGCGGGCGGGTGGCTCGGCAT + 2524;@@@/4<@6@;9?C@@93@>BAB2>>C@>B>C4BC4@-+B<@525++%=)######## -@IL4_4847:5:1:1122:6048/1 +@ERR027433.IL4_4847:5:1:1122:6048/1 ATCTCCTCGACGCGCACCAGATAGCGGTCGTAGCAATCGCCGTCCACGCCGACGGGCCCACT + BBB@@@@@@@AB.<@2)7;B-@==:@>@@@A7@);9@@@@=1B@@@@2@=*:4@@@0%(-$,'3%%'%$%$,44%3&$=$C;CC-C## diff -r 516a54ddf218 -r 8848455c0270 test-data/ERR027433_reverse.fastqsanger --- a/test-data/ERR027433_reverse.fastqsanger Mon Jun 03 15:07:36 2024 +0000 +++ b/test-data/ERR027433_reverse.fastqsanger Mon Aug 26 14:59:28 2024 +0000 @@ -1,20 +1,20 @@ -@IL4_4847:5:1:1051:7109/3 +@ERR027433.IL4_4847:5:1:1051:7109/3 AACGCACTGCGCGCGGACTCGCCCCCGCGGCCACTCCGTGGGCCGGCGTACGGA + )(664;(>>/:1<+/'())0)',8%'*7'+9904)'(+()'''':+4+'.7)'( -@IL4_4847:5:1:1058:16093/3 +@ERR027433.IL4_4847:5:1:1058:16093/3 GCATAGCTGCCCTCGCCTTCTACTCGCACCGAACAAGCGGCCCGCCTACGCGGG + ;=>1(/2(:/=@(:'9/<(*'&.(?.6)(';+.5''-3.&''7(96%0:+($2$ -@IL4_4847:5:1:1111:15034/3 +@ERR027433.IL4_4847:5:1:1111:15034/3 GAGTGGAGCCGCGGACGGGAGCGCGGCGGCTGCCTCACAGCACCCGGGGGGTCG + ::3+:2655(*('((3*&&&4+')6'3/2,+++*.+')-/)4((<-+&&'&%<( -@IL4_4847:5:1:1122:6048/3 +@ERR027433.IL4_4847:5:1:1122:6048/3 GAGGTCGGCGTTCTGGATGACAGGCGCGAAGCCCCCGCCGTCGGTGCCTTCACG + =8+(-(,(3.5*=99+;).)8'(,(/(+(-6@'-3<6&,%/4++)')1/)>(.& -@IL4_4847:5:1:1138:20693/3 +@ERR027433.IL4_4847:5:1:1138:20693/3 TGGACGTTGTGGTGGTTGTAAGAGATTTCGCTCCCCATGTTGGCGAGCTGCGAT + ;)?5;=9996@((((097:41=,A((+)5>9,:''''67+9)=(968-(8;8)3 diff -r 516a54ddf218 -r 8848455c0270 test-data/ERR086330_1.fastq.gz Binary file test-data/ERR086330_1.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/ERR086330_2.fastq.gz Binary file test-data/ERR086330_2.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR002702_1.fastq.gz Binary file test-data/SRR002702_1.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR002702_2.fastq.gz Binary file test-data/SRR002702_2.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR11953971_1.fastq.gz Binary file test-data/SRR11953971_1.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR11953971_2.fastq.gz Binary file test-data/SRR11953971_2.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR1993644.fastqsanger --- a/test-data/SRR1993644.fastqsanger Mon Jun 03 15:07:36 2024 +0000 +++ b/test-data/SRR1993644.fastqsanger Mon Aug 26 14:59:28 2024 +0000 @@ -1,20 +1,20 @@ -@1/2 +@SRR1993644.1/2 TATACTACTGTCATGTTTGCTTTTTTCGTGCTCATTACCTTATCGTATGCTTCCATCCAAAGATCTAGTTGTTTATAATATTCTCCCGGCCTTACTTCAAC + ?@GG48BBCF)8877=@=@C7=E??EBD:AADA;>C3;BB6:A@>>@:3> -@2/2 +@SRR1993644.2/2 AAAAAAACTTTCTTTACAGGCGTAAAGAAAGTGAAATTGACAGTATTTATACATGAAATAGCAATGTCTTTCCCACTTCCCTACGCTGGCATTAACCAGAT + <@@DA6DDF42ABGF9F?F@C04BGC>BFF>EBDBB@@:ACCCAB8@?=;B<@BABBBBB?# -@3/2 +@SRR1993644.3/2 GTGCCATCATTTTCTATCCATTATTATGGATTATTGGCTCATCGTTTAATCCGGGTGATAGTTTATCTGGATCAAGTATTATTCCACAAAATGCAACGTTA + =BBFFFFFHHHHHJJJJJJJJJJJJIJIJEIIGIJJJHGIGGIIGHIDIJGHIIJ?FFHGIIJJJJJJJJHGIHHHCEHFFFFFFFFEAECCDADDDDDDD -@4/2 +@SRR1993644.4/2 TTCAAAACACATAAAGCTAATTGCCGCATATGACAATATTGCTAAAATAATTTTTTTACCAGATATCGGTGTTAATCGAAATAATGTACTTTCGGTCATTT + BBCFFFFFHHHHHJJJJJJJJJJJJJJJJJJJJJJJIJJJJJJIJJJJJJIIJJJJJJJIJJHHHHHFFDDCDEEEDDDDDDDDEDDDFFFEDDDDDDDDE -@5/2 +@SRR1993644.5/2 ACTTGCCAATGCGATGCACCAATCTTTTCAGCAATAATCGGCAAAATTGGGTCGACTACTCCTATACCTGAAAAGGCAAGGAAAGTAGCCAACACTGTAAT + BCCFFFFFHHHHHIJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJIHIIJIJHHHHFFFFFFEEEEEEDDDDDDDDDDDDDCDDDDDDDDDDDDDED diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874.fastq.gz Binary file test-data/SRR522874.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874.sra_1.fastq.gz Binary file test-data/SRR522874.sra_1.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874.sra_2.fastq.gz Binary file test-data/SRR522874.sra_2.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874.sra_2_1.fastq.gz Binary file test-data/SRR522874.sra_2_1.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874.sra_3.fastq.gz Binary file test-data/SRR522874.sra_3.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874.sra_4.fastq.gz Binary file test-data/SRR522874.sra_4.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874.sra_4_1.fastq.gz Binary file test-data/SRR522874.sra_4_1.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874_1.fastq.gz Binary file test-data/SRR522874_1.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR522874_2.fastq.gz Binary file test-data/SRR522874_2.fastq.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR6982805.fastqsanger.gz Binary file test-data/SRR6982805.fastqsanger.gz has changed diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR925743_forward.fastqsanger --- a/test-data/SRR925743_forward.fastqsanger Mon Jun 03 15:07:36 2024 +0000 +++ b/test-data/SRR925743_forward.fastqsanger Mon Aug 26 14:59:28 2024 +0000 @@ -1,20 +1,20 @@ -@1/1 +@SRR925743.1/1 AGGGATGTGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT + EGGEGGGDFGEEEAEECGDEGGFEEGEFGBEEDDECFEFDD@CDDBA8:>@:4+36945&4354445>/B>@ -@2/1 +@SRR925743.2/1 AGGGATGTGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGGTAGGGTTAGGGT + HHHHHHEGFHEEFEEHEEHHGGEGGGGEFGFGGGGHHHHFBEEEEEFGGEEAEEEDD0ADDBD9BDBDDA@6?BA;?CD=:-7<<::)1;5,6-6A@?=9 -@3/1 +@SRR925743.3/1 CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCA + HHHHFHHHHHHHHHHHFHHHHHHHHHHHHHHHHHHHHHHHGEFHGEGGFGGGGGGHHHHEFEIDDEEEEEDD4DD;??:6>6<@.<==@?.@@@D@CD8->=>=<@CB@##### -@5/1 +@SRR925743.5/1 CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACACTAACCCTCACACTCACCCTA + GGGFGFFGGGFBGGEGGFFGGGCFFGGGGGEGFFFFFGFFGFFFDFFB+FGGFEE?FCF::7B5A?+BB############################### diff -r 516a54ddf218 -r 8848455c0270 test-data/SRR925743_reverse.fastqsanger --- a/test-data/SRR925743_reverse.fastqsanger Mon Jun 03 15:07:36 2024 +0000 +++ b/test-data/SRR925743_reverse.fastqsanger Mon Aug 26 14:59:28 2024 +0000 @@ -1,20 +1,20 @@ -@1/2 +@SRR925743.1/2 CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA + GHHHDFDFGFGEGFBGEGGEGEGGGHGFGHFHFHHHHHHHEF?EFEFF?EHGGHHHGHFHEHDEHGHFFEEE9BDDBEBAD.AD:ACBBC=4@>?5>=+? -@2/2 +@SRR925743.2/2 CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTA + HHHHHHHHHHHHHGHHHHHHGHHHHHHHHHHHFHHHFHHHHHHHHHHHHHHHHHHHGHHHGHHBHGHHFDBDDED5FCFCEEGF<@>>>@,<5<@@?>;D -@3/2 +@SRR925743.3/2 ATGGATGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT + HHHHHHHHHFIEGFHFHDHHHHGFFHGEGDIGGEGGHHHAGEGGGDHHHHHHHHHHHFGDGGGEGDFFF>BEEEE3B;BB;>B7C@DA=DFBDD.BEE=9 -@4/2 +@SRR925743.4/2 ATGGATGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGT + GFFFHHFFHHHFHHFEFGGBGEEEE?<9?6=>>:=DDDD@DBGDB;DBDBA.ADD8<2<>6A@=A5>550=>>>>BE;EEEDEEE79+336<68=BCEB@ -@5/2 +@SRR925743.5/2 ATGGATGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGGTAGGGTTAGGGTTAGGGTTAGGGGTAGGGT + 479<.>><:+?=9@########