diff test-data/procrad/process_radtags2.out @ 1:b75174403a65 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author iuc
date Mon, 30 Sep 2019 14:19:47 -0400
parents
children 42201b90e3f4
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/procrad/process_radtags2.out	Mon Sep 30 14:19:47 2019 -0400
@@ -0,0 +1,88 @@
+process_radtags v2.4, executed 2019-09-30 14:57:00 (zlib-1.2.11)
+process_radtags -p stacks_inputs/ -i gzfastq -b /tmp/tmpe_shit/files/d/e/d/dataset_ded45538-15ef-471f-9585-07ee09b6e6d4.dat --inline_null -y gzfastq -o stacks_outputs -w 0.1 -s 11 -c -q -D -e ecoRI
+File	Retained Reads	Low Quality	Barcode Not Found	RAD cutsite Not Found	Total
+R1.fastq.gz	2222	0	0	4778	7000
+R2.fastq.gz	0	0	7000	0	7000
+
+Total Sequences	14000
+Barcode Not Found	7000
+Low Quality	0
+RAD Cutsite Not Found	4778
+Retained Reads	2222
+
+Barcode	Filename	Total	NoRadTag	LowQuality	Retained
+ATGGGG	PopA_01	160	94	0	66
+GGGTAA	PopA_02	146	86	0	60
+AGGAAA	PopA_03	224	132	0	92
+TTTAAG	PopA_04	168	146	0	22
+GGTGTG	PopA_05	220	154	0	66
+TGATGT	PopA_06	214	147	0	67
+GGTTGT	PopA_07	182	137	0	45
+ATAAGT	PopA_08	232	164	0	68
+AAGATA	PopA_09	182	134	0	48
+TGTGAG	PopA_10	168	128	0	40
+ATAGTT	PopA_11	200	132	0	68
+GGAAGG	PopA_12	178	136	0	42
+TTTGTG	PopA_13	190	152	0	38
+TTAAAT	PopA_14	166	96	0	70
+AATAAG	PopA_15	152	74	0	78
+AAGAGG	PopA_16	174	112	0	62
+TAGTGT	PopA_17	242	146	0	96
+TGGAAG	PopA_18	148	98	0	50
+GGGTTG	PopA_19	110	64	0	46
+CATCAT	PopA_20	178	144	0	34
+GGAGAG	PopB_20	210	142	0	68
+GTTTTA	PopB_01	136	90	0	46
+TGATAA	PopB_02	166	108	0	58
+GTTGAT	PopB_03	148	74	0	74
+AGATTA	PopB_04	180	156	0	24
+GTATAG	PopB_05	136	106	0	30
+TTGGGA	PopB_06	166	112	0	54
+ATATAT	PopB_07	242	156	0	86
+GATGAG	PopB_08	208	152	0	56
+GGGAAT	PopB_09	198	126	0	72
+AGTAAT	PopB_10	164	120	0	44
+GGGATA	PopB_11	146	90	0	56
+GAGAAG	PopB_12	162	110	0	52
+AGTAGA	PopB_13	204	146	0	58
+AAGGAT	PopB_14	180	128	0	52
+AGGGTA	PopB_15	134	72	0	62
+TGTTTT	PopB_16	138	98	0	40
+ATGATG	PopB_17	142	100	0	42
+GAGTTA	PopB_18	160	112	0	48
+ATGTAG	PopB_19	146	104	0	42
+
+Sequences not recorded
+Barcode	Total
+CCGGTG	772
+CCGCGC	750
+CCGACA	743
+CCGGTC	723
+CCGCCT	695
+CCGTGG	675
+CCGGTT	667
+CCGATC	579
+CCGTGT	417
+CCGTAT	252
+CCGCGT	198
+CCGCGG	150
+CCGCAT	117
+CCGTTC	94
+CCGTAC	38
+CCGGGA	32
+CCGGAG	26
+CCGAAC	24
+CCGAGT	18
+CCGTGA	10
+CCGGGT	7
+CCGCTT	2
+CCGACG	2
+CCGATT	1
+CCGCCC	1
+CCGGCA	1
+CCGGCT	1
+CCGGGG	1
+CCGCCG	1
+CCGTGC	1
+CCGTAG	1
+CCGACT	1