Mercurial > repos > iuc > stacks2_cstacks

comparison stacks_cstacks.xml @ 6:8501601a118d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084
author iuc
date Wed, 11 May 2022 06:44:59 +0000
parents 0cd2df8af811
children
comparison
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5:0cd2df8af811 6:8501601a118d
108 <has_text text="--min_aln_len 0.8"/> 108 <has_text text="--min_aln_len 0.8"/>
109 </assert_command> 109 </assert_command>
110 <param name="add_log" value="yes"/> 110 <param name="add_log" value="yes"/>
111 <output name="output_log"><assert_contents><has_text text="done."/></assert_contents></output> 111 <output name="output_log"><assert_contents><has_text text="done."/></assert_contents></output>
112 <output_collection name="catalog" type="list"> 112 <output_collection name="catalog" type="list">
113 <element name="catalog.alleles"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> 113 <expand macro="test_element_stacks_completed" element_name="catalog.alleles" />
114 <element name="catalog.snps"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> 114 <expand macro="test_element_stacks_completed" element_name="catalog.snps" />
115 <element name="catalog.tags"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> 115 <expand macro="test_element_stacks_completed" element_name="catalog.tags" />
116 </output_collection> 116 </output_collection>
117 </test> 117 </test>
118 <!-- test w non default options (wo gapped, because tested already in ustacks) --> 118 <!-- test w non default options (wo gapped, because tested already in ustacks) -->
119 <test expect_num_outputs="1"> 119 <test expect_num_outputs="1">
120 <param name="input_stacks"> 120 <param name="input_stacks">
137 <has_text text="--report_mmatches"/> 137 <has_text text="--report_mmatches"/>
138 </assert_command> 138 </assert_command>
139 <param name="add_log" value="no"/> 139 <param name="add_log" value="no"/>
140 <assert_stderr><has_text text="done."/></assert_stderr> 140 <assert_stderr><has_text text="done."/></assert_stderr>
141 <output_collection name="catalog" type="list"> 141 <output_collection name="catalog" type="list">
142 <element name="catalog.alleles"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> 142 <expand macro="test_element_stacks_completed" element_name="catalog.alleles" />
143 <element name="catalog.snps"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> 143 <expand macro="test_element_stacks_completed" element_name="catalog.snps" />
144 <element name="catalog.tags"><assert_contents><has_text text="# cstacks completed on "/></assert_contents></element> 144 <expand macro="test_element_stacks_completed" element_name="catalog.tags" />
145 </output_collection> 145 </output_collection>
146 </test> 146 </test>
147 </tests> 147 </tests>
148 <help> 148 <help>
149 <![CDATA[ 149 <![CDATA[